Browse Element(s) Details


Os.11902.1.S1_at

Description gb:AK119532.1
DB_XREF= gi:37989155
TID=Os.11902.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADH dehydrogenase (OSJNBb0094O03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F01, full insert sequence.
FL= gb:AK065851.1 gb:AK119532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5630010/11NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56260Os.25316.1.S1_at11/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56260Os.25316.2.S1_x_at10/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0015979biological_processphotosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003959molecular_functionNADPH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11902.1.S1_at--1003--7351NONE
GTGAAGCTATATGCCCAGCTCAGGC
NONE
Os.11902.1.S1_at--112--651Chr03:32031877..32031901 (25 bp)
ATGCATCTATTGTGGCTTCTGCCAA
LOC_Os03g56300
Os.11902.1.S1_at--482--1451Chr03:32031853..32031877 (25 bp)
AGAAGCTTGTCCTGTTGATGCCATC
LOC_Os03g56300
Os.11902.1.S1_at--1047--8851Chr03:32031838..32031862 (25 bp)
TGATGCCATCGTTGAGGGTCCTAAC
LOC_Os03g56300
Os.11902.1.S1_at--969--7691Chr03:32031823..32031847 (25 bp)
GGGTCCTAACTTTGAGTTTGCTACT
LOC_Os03g56300
Os.11902.1.S1_at--412--5551Chr03:32031717..32031822 (25 bp)
GAAACCCATGAGGAACTGCTATACG
LOC_Os03g56300
Os.11902.1.S1_at--112--7911Chr03:32031634..32031658 (25 bp)
GGAGTCCGAGAGTCTTTACCGTTGA
LOC_Os03g56300
Os.11902.1.S1_at--401--1011Chr03:32031591..32031615 (25 bp)
AGGATTCAGCATTTCCCTGTTTTAC
LOC_Os03g56300
Os.11902.1.S1_at--727--631Chr03:32031512..32031536 (25 bp)
ATGCTTTTGTACCTTGGTCCATCAT
LOC_Os03g56300
Os.11902.1.S1_at--640--6512Chr05:23235819..23235843 (23 bp)
GATATCATTGTACTGTTGTCGACTC
NONE
Os.11902.1.S1_at--1069--8811Chr03:32031429..32031453 (25 bp)
TGTTGTCGACTCAGATGGCATTTTG
LOC_Os03g56300
Target Sequence 
GTGAAGCTATATGCCCAGCTCAGGCAATCACAATTGAGGCAGAAGAACGTGAAGACGGTAGTCGTAGAACTACAAGATAT
GATATTGATATGACCAAATGCATCTATTGTGGCTTCTGCCAAGAAGCTTGTCCTGTTGATGCCATCGTTGAGGGTCCTAA
CTTTGAGTTTGCTACTGAAACCCATGAGGAACTGCTATACGACAAGGAAAAATTGCTTGAGAACGGCGATCGTTGGGAGA
CTGAGATTGCTGCAAACTTGGAGTCCGAGAGTCTTTACCGTTGATTTTTGTTACTCATGATAAGGATTCAGCATTTCCCT
GTTTTACTCAACTAGCTGATAAATAAGCAAACTTTGTATCATAACCTAAATACCTGGTACCATGCTTTTGTACCTTGGTC
CATCATTTGTTATTTTGTGCCAGGGTAAAGGTGCATTACCATGTTTTTTTCGATATCATTGTACTGTTGTCGACTCAGAT
GGCATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis