Browse Element(s) Details


Os.11226.1.S1_at

Description gb:AK066871.1
DB_XREF= gi:32976889
TID=Os.11226.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) known protein (OSJNBa0070N04.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013083F24, full insert sequence.
FL= gb:AK066871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5633011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11226.1.S1_at--229--271Chr03:32052307..32052331 (25 bp)
ATATGTGGAAAACCTCTCTGCAAAA
LOC_Os03g56330
Os.11226.1.S1_at--885--1031Chr03:32052455..32052479 (25 bp)
AGGTGCTCCAGGGACCCGTATGCCG
LOC_Os03g56330
Os.11226.1.S1_at--807--3631Chr03:32052521..32052545 (25 bp)
CTTCCGTTTCTGCACCGTAATGATG
LOC_Os03g56330
Os.11226.1.S1_at--447--1791Chr03:32052534..32052558 (25 bp)
ACCGTAATGATGCTGCTTGCCGATT
LOC_Os03g56330
Os.11226.1.S1_at--941--3831Chr03:32052546..32052570 (25 bp)
CTGCTTGCCGATTTGACTGCGAATA
LOC_Os03g56330
Os.11226.1.S1_at--655--10091Chr03:32052569..32052593 (25 bp)
TAGGAGTAGATTTGACTGCCCGATT
LOC_Os03g56330
Os.11226.1.S1_at--659--10731Chr03:32052580..32052604 (25 bp)
TTGACTGCCCGATTGATTGATAGAT
LOC_Os03g56330
Os.11226.1.S1_at--973--8031Chr03:32052659..32052683 (25 bp)
GGAGTACCTTGCCTATTGTATGATA
LOC_Os03g56330
Os.11226.1.S1_at--695--3111Chr03:32052727..32052751 (25 bp)
AATTTCTTATTAGGGCGATGGTACA
LOC_Os03g56330
Os.11226.1.S1_at--178--10011Chr03:32052737..32052761 (25 bp)
TAGGGCGATGGTACAGGATACTACT
LOC_Os03g56330
Os.11226.1.S1_at--681--5691Chr03:32052769..32052793 (25 bp)
GACTTTATAATTTTTGGCTGTGCAT
LOC_Os03g56330
Target Sequence 
ATATGTGGAAAACCTCTCTGCAAAAGAGAGATAAGGAGGTAGGGATGCAGNGAGGTGCTCCAGGGACCCGTATGCCGCCG
GGTCACCGGATCTGCACCNCGCCGTCTTCCGTCTCCGCCTTCCGTTTCTGCACCGTAATGATGCTGCTTGCCGATTTGAC
TGCGAATAGGAGTAGATTTGACTGCCCGATTGATTGATAGATCCATTGTTTACCNACAGAAACAATAATAATACTCTACT
ACTACTCCTACATAGTAGGAGTACCTTGCCTATTGTATGATACTAGAAGTAGTAAATTGATGGTACAGGATAATACAGAC
TTATAAATTTCTTATTAGGGCGATGGTACAGGATACTACTGGGAGTAGACTTTATAATTTTTGGCTGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis