Browse Element(s) Details


Os.12046.1.S1_at

Description gb:AU057613
DB_XREF= gi:4716497
DB_XREF=AU057613
CLONE=S21617_2Z
TID=Os.12046.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0070N04.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5637011/11methyltransferase, putative, TIGR00027 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12046.1.S1_at--127--4851Chr03:32076309..32076333 (25 bp)
GCTACAGAGCTACGGCTATGTTCCT
LOC_Os03g56370
Os.12046.1.S1_at--1017--10091Chr03:32076271..32076295 (25 bp)
TATGGGTTCTTGAAGGCATCCTCTA
LOC_Os03g56370
Os.12046.1.S1_at--115--10211Chr03:32076248..32076272 (25 bp)
TATTACCTTCACCATGTCCATGCAA
LOC_Os03g56370
Os.12046.1.S1_at--373--2851Chr03:32076220..32076244 (25 bp)
AAGTCCTCGAAACCATTGTGGCCTG
LOC_Os03g56370
Os.12046.1.S1_at--966--2731Chr03:32076152..32076176 (25 bp)
AAGAATGCAGTATCGCTCTCTCGGG
LOC_Os03g56370
Os.12046.1.S1_at--315--191Chr03:32076118..32076142 (25 bp)
ATTTCTACCATGACAGCCCTGATCT
LOC_Os03g56370
Os.12046.1.S1_at--662--7891Chr03:32076076..32076100 (25 bp)
GGTTCTCTCAGGTAACTTTGTCACA
LOC_Os03g56370
Os.12046.1.S1_at--367--171Chr03:32076031..32076055 (25 bp)
ATTTTGGGCTGCTAAGTCACCCGCA
LOC_Os03g56370
Os.12046.1.S1_at--657--7091Chr03:32076016..32076040 (25 bp)
GTCACCCGCAGAACCTGTTTGATAA
LOC_Os03g56370
Os.12046.1.S1_at--607--1331Chr03:32075955..32075979 (25 bp)
AGAGGATGGCACACCATGCTGCAGA
LOC_Os03g56370
Os.12046.1.S1_at--133--8751Chr03:32075929..32075953 (25 bp)
TGTACTTGGTAGAAGCCTCTGCTTT
LOC_Os03g56370
Target Sequence 
GCTACAGAGCTACGGCTATGTTCCTGNAAAGGAACACCATATGGGTTCTTGAAGGCATCCTCTATTACCTTCACCATGTC
CATGCAATGCAAGTCCTCGAAACCATTGTGGCCTGCCGCACCTCAGTCCACACTGTCCTCCTGGCTGACTTCATGAACAA
GAATGCAGTATCGCTCTCTCGGGCAATGTACCATTTCTACCATGACAGCCCTGATCTCCTGCTGCCTTCCATTGGGTTCT
CTCAGGTAACTTTGTCACAAATTGGAGATCCACAAGCACATTTTGGGCTGCTAAGTCACCCGCAGAACCTGTTTGATAAA
CTGAGGAGATTGCCAAGATCAGTGGAGACAAACCCAGAGGATGGCACACCATGCTGCAGATTGTACTTGGTAGAAGCCTC
TGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis