Browse Element(s) Details


Os.5746.1.S1_at

Description gb:AK120397.1
DB_XREF= gi:37990020
TID=Os.5746.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0070N04.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075O03, full insert sequence.
FL= gb:AK120397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5638011/11methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5746.1.S1_at--1159--1351Chr03:32085024..32085048 (25 bp)
AGAGAAGCTTGAGATCCTTGATCCA
LOC_Os03g56380
Os.5746.1.S1_at--340--2231Chr03:32085104..32085128 (25 bp)
ACAAGGCGGGCATCATGTCTGTAAA
LOC_Os03g56380
Os.5746.1.S1_at--522--2071Chr03:32085136..32085160 (25 bp)
ACTTGGCGGCCATGATCTAATCTGT
LOC_Os03g56380
Os.5746.1.S1_at--803--3051Chr03:32085154..32085178 (25 bp)
AATCTGTTGATACGAGTCTCCCGAC
LOC_Os03g56380
Os.5746.1.S1_at--467--2111Chr03:32085198..32085222 (25 bp)
ACAGGCGTACAGCTATTGATTTCTT
LOC_Os03g56380
Os.5746.1.S1_at--1125--1871Chr03:32085241..32085265 (25 bp)
ACGATTGATTCATTGTTTGCACCAA
LOC_Os03g56380
Os.5746.1.S1_at--111--3111Chr03:32085267..32085291 (25 bp)
AATATGCTAGCCATCTACTACCTGT
LOC_Os03g56380
Os.5746.1.S1_at--141--5231Chr03:32085296..32085320 (25 bp)
GAATACTTCTGGAGCATCCCAGTTC
LOC_Os03g56380
Os.5746.1.S1_at--204--551Chr03:32085311..32085335 (25 bp)
ATCCCAGTTCCAGGCGCGAGGAAGA
LOC_Os03g56380
Os.5746.1.S1_at--385--2371Chr03:32085504..32085528 (25 bp)
AAACCTTTTCCTGTATTACTCTCTG
LOC_Os03g56380
Os.5746.1.S1_at--292--3851Chr03:32085526..32085550 (25 bp)
CTGCACTTGCTCTTCCACAAGAAAG
LOC_Os03g56380
Target Sequence 
AGAGAAGCTTGAGATCCTTGATCCATTAGAGAAAATTCTGAAATCATTGCATTGGGAAATAGTGATGGCATTCAGGAAGG
ACAAGGCGGGCATCATGTCTGTAAAGAAGACGACTTGGCGGCCATGATCTAATCTGTTGATACGAGTCTCCCGACATACC
AATTTTNAAGTGGTACAGGCGTACAGCTATTGATTTCTTAATCTGGGTTAAAGATACACGATTGATTCATTGTTTGCACC
AACAATATGCTAGCCATCTACTACCTGTTGTAGAATACTTCTGGAGCATCCCAGTTCCAGGCGCGAGGAAGAGACCCTGA
AATTCAGGCTGGATACTGAAAAACAGGGTTGTACAAGCTGTAACATTTAGCAATTGTTTGTATTTCTTGTAAATTGTAAC
AATATGTAAAGATTGCAACAATTGCTTGGTGCTGTTTAAAATTGTAAAAATGTGTGAATACTGTACGTAAGACGAGAACA
AAACCTTTTCCTGTATTACTCTCTGCACTTGCTCTTCCACAAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis