Browse Element(s) Details


Os.17939.2.S1_at

Description gb:AK106362.1
DB_XREF= gi:32991571
TID=Os.17939.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0070N04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-B02, full insert sequence.
FL= gb:AK106362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5642011/11dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17939.2.S1_at--891--5011Chr03:32100432..32100456 (25 bp)
GCAGGTACCTGCTAAGCATGTTTGA
LOC_Os03g56420
Os.17939.2.S1_at--903--2191Chr03:32100473..32100497 (25 bp)
ACAATCTCAAACTCCCCATTTAGGG
LOC_Os03g56420
Os.17939.2.S1_at--42--7851Chr03:32100503..32100527 (25 bp)
GGTAGTCTATAGTCTCATATTTGGG
LOC_Os03g56420
Os.17939.2.S1_at--452--9011Chr03:32100544..32100568 (25 bp)
TGAATTCAAGAGACTCCTTTTCCCC
LOC_Os03g56420
Os.17939.2.S1_at--1147--4831Chr03:32100644..32100668 (25 bp)
GCTAAGAGCCAACTACAGATAACAT
LOC_Os03g56420
Os.17939.2.S1_at--792--5811Chr03:32100695..32100719 (25 bp)
GACCCTTTTAAATTTTCCAATGCAT
LOC_Os03g56420
Os.17939.2.S1_at--1007--3991Chr03:32100723..32100747 (25 bp)
CGTGTTGTTATGCAAGTTTCTGTGA
LOC_Os03g56420
Os.17939.2.S1_at--495--1731Chr03:32100763..32100787 (25 bp)
ACCATAGCCATGTCATTTCCCATGT
LOC_Os03g56420
Os.17939.2.S1_at--189--191Chr03:32100777..32100801 (25 bp)
ATTTCCCATGTTCTCTTTTACAAGG
LOC_Os03g56420
Os.17939.2.S1_at--1154--5231Chr03:32100817..32100841 (25 bp)
GAATCAGTCTAGGAACAGTTGTTAA
LOC_Os03g56420
Os.17939.2.S1_at--767--4831Chr03:32100853..32100877 (25 bp)
GCTCAATTATCAGTACTTGTACCAT
LOC_Os03g56420
Target Sequence 
GCAGGTACCTGCTAAGCATGTTTGAAAGTTTTTATTTGTCTACAATCTCAAACTCCCCATTTAGGGTTTTAGGTAGTCTA
TAGTCTCATATTTGGGAGGTGATGGATAGCTTTGAATTCAAGAGACTCCTTTTCCCCCTAAAAAGCAGTGAGGCAACTGT
GCATAAGAAACAGTGAAATAGTTTGAGCATTTTTTTGCAGCATGTTAGTTTAGCTAAGAGCCAACTACAGATAACATATG
TTTCAATATGAGGAGTATAAACAGACCCTTTTAAATTTTCCAATGCATATACGTGTTGTTATGCAAGTTTCTGTGAAAAC
AACACTATATCACCATAGCCATGTCATTTCCCATGTTCTCTTTTACAAGGATAACAGAGAGACTAGAATCAGTCTAGGAA
CAGTTGTTAATCCTTATATAAGCTCAATTATCAGTACTTGTACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17939.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis