Browse Element(s) Details


Os.45026.1.S1_at

Description gb:CB645252
DB_XREF= gi:29640243
DB_XREF=OSJNEb06N05.r
CLONE=OSJNEb06N05
TID=Os.45026.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinase (OSJNBa0070N04.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5647011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45026.1.S1_at--310--1931Chr03:32122316..32122340 (25 bp)
ACTCGGCGAAGAAGCGCCCCAAGAT
LOC_Os03g56470
Os.45026.1.S1_at--693--1351Chr03:32122126..32122150 (25 bp)
AGAGCATGGTGTTCGGCACGGCGGA
LOC_Os03g56470
Os.45026.1.S1_at--45--391Chr03:32122088..32122112 (25 bp)
ATCAGCGAGGCTTCCGGGTCGTACA
LOC_Os03g56470
Os.45026.1.S1_at--1075--7791Chr03:32122072..32122096 (25 bp)
GGTCGTACACGTTCGACATGGACCG
LOC_Os03g56470
Os.45026.1.S1_at--164--8531Chr03:32122054..32122078 (25 bp)
TGGACCGGATCATTCAGGAGGCGAC
LOC_Os03g56470
Os.45026.1.S1_at--611--9271Chr03:32122013..32122037 (25 bp)
TCCGGCCGGCGAGACGATGTGTCTT
LOC_Os03g56470
Os.45026.1.S1_at--825--5991Chr03:32122003..32122027 (25 bp)
GAGACGATGTGTCTTTCTCCGGCGA
LOC_Os03g56470
Os.45026.1.S1_at--371--4911Chr03:32121927..32121951 (25 bp)
GCTTCTGAGTTGCTGGGTATCACTT
LOC_Os03g56470
Os.45026.1.S1_at--153--3511Chr03:32121894..32121918 (25 bp)
CATGTGTGGTGTGGGAAGTCAACTA
LOC_Os03g56470
Os.45026.1.S1_at--1084--8191Chr03:32121881..32121905 (25 bp)
GGAAGTCAACTAACACAAAGTGTGC
LOC_Os03g56470
Os.45026.1.S1_at--1101--2431Chr03:32121870..32121894 (25 bp)
AACACAAAGTGTGCCCAATTTTTAT
LOC_Os03g56470
Target Sequence 
ACTCGGCGAAGAAGCGCCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACATGTCGCTGGAGGACCTGAACGAG
GGGATGCGGCCGGGGCAGAGCATGGTGTTCGGCACGGCGGAGACCGGGGGCAGCATCAGCGAGGCTTCCGGGTCGTACAC
GTTCGACATGGACCGGATCATTCAGGAGGCGACGGCGGCGAGGCTGGAGTCCGGCCGGCGAGACGATGTGTCTTTCTCCG
GCGAGATGAGCGCGGAGTGGAAGCAGCCTCCGCACCGGGTGAGCAGGTAGCAGCAGCTTCTGAGTTGCTGGGTATCACTT
GGGGTGGCCATGTGTGGTGTGGGAAGTCAACTAACACAAAGTGTGCCCAATTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis