Browse Element(s) Details


OsAffx.3623.1.S1_at

Description tigr:9631.m05520
TID=OsAffx.3623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5642011/11dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3623.1.S1_at--150--10051Chr03:32102571..32102595 (25 bp)
TAGATATAAGTGAGGCTTTTTGTTC
LOC_Os03g56420
OsAffx.3623.1.S1_at--408--1251Chr03:32102572..32102596 (25 bp)
AGATATAAGTGAGGCTTTTTGTTCT
LOC_Os03g56420
OsAffx.3623.1.S1_at--691--211Chr03:32102574..32102598 (25 bp)
ATATAAGTGAGGCTTTTTGTTCTTC
LOC_Os03g56420
OsAffx.3623.1.S1_at--976--10171Chr03:32102575..32102599 (25 bp)
TATAAGTGAGGCTTTTTGTTCTTCG
LOC_Os03g56420
OsAffx.3623.1.S1_at--627--351Chr03:32102576..32102600 (25 bp)
ATAAGTGAGGCTTTTTGTTCTTCGA
LOC_Os03g56420
OsAffx.3623.1.S1_at--843--9771Chr03:32102577..32102601 (25 bp)
TAAGTGAGGCTTTTTGTTCTTCGAT
LOC_Os03g56420
OsAffx.3623.1.S1_at--165--9531Chr03:32102628..32102652 (25 bp)
TCTCTTGTCTGCAATGCCAATCATT
LOC_Os03g56420
OsAffx.3623.1.S1_at--1132--3751Chr03:32102629..32102653 (25 bp)
CTCTTGTCTGCAATGCCAATCATTT
LOC_Os03g56420
OsAffx.3623.1.S1_at--411--3851Chr03:32102636..32102660 (25 bp)
CTGCAATGCCAATCATTTTTGCTCC
LOC_Os03g56420
OsAffx.3623.1.S1_at--826--9011Chr03:32102637..32102661 (25 bp)
TGCAATGCCAATCATTTTTGCTCCC
LOC_Os03g56420
OsAffx.3623.1.S1_at--234--5251Chr03:32102702..32102726 (25 bp)
GAATCACTTGCTGCTACCTTGAGCC
LOC_Os03g56420
Target Sequence 
TAGATATAAGTGAGGCTTTTTGTTCTTCGATTCTGCAGTCACTCTGGAATCTGTTGCTCTCTTGTCTGCAATGCCAATCA
TTTTTGCTCCCTTGAGATGTAAATATTAGTCTGTATGGCAAATAAAGAGTCGAATCACTTGCTGCTACCTTGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis