Browse Element(s) Details


OsAffx.22667.1.S1_at

Description gb:NM_184906.1
DB_XREF= gi:34896901
TID=OsAffx.22667.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0070N04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5644011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22667.1.S1_at--66--8471Chr03:32108701..32108725 (25 bp)
TGGCCTCGCGCGATGGCATTCTCGT
LOC_Os03g56440
OsAffx.22667.1.S1_at--23--8451Chr03:32108630..32108654 (25 bp)
GGCCAACTTTGTGCGATCAAGACTC
LOC_Os03g56440
OsAffx.22667.1.S1_at--720--6451Chr03:32108616..32108640 (25 bp)
GATCAAGACTCGACCACTTGAGCTG
LOC_Os03g56440
OsAffx.22667.1.S1_at--183--2071Chr03:32108601..32108625 (25 bp)
ACTTGAGCTGCTCGTCTGTAACATG
LOC_Os03g56440
OsAffx.22667.1.S1_at--294--4811Chr03:32108592..32108616 (25 bp)
GCTCGTCTGTAACATGCTCACCGGG
LOC_Os03g56440
OsAffx.22667.1.S1_at--70--3731Chr03:32108551..32108575 (25 bp)
CTACCCTGAGCTTCTGCGACGACGA
LOC_Os03g56440
OsAffx.22667.1.S1_at--665--5651Chr03:32108453..32108477 (25 bp)
GACAGTCACCTGACAACGCAGACGT
LOC_Os03g56440
OsAffx.22667.1.S1_at--1162--2591Chr03:32108439..32108463 (25 bp)
AACGCAGACGTACCAATCACAGAAC
LOC_Os03g56440
OsAffx.22667.1.S1_at--447--8091Chr03:32108324..32108348 (25 bp)
GGACGAACCGTACACTGGCTCTGCC
LOC_Os03g56440
OsAffx.22667.1.S1_at--321--8451Chr03:32108309..32108333 (25 bp)
TGGCTCTGCCATAAATCCCGACCAA
LOC_Os03g56440
OsAffx.22667.1.S1_at--107--3591Chr03:32108202..32108226 (25 bp)
CATTGGCGGGAAGACCGGCGCCTTC
LOC_Os03g56440
Target Sequence 
TGGCCTCGCGCGATGGCATTCTCGTCCTCCGCCGCGAGCACCGGGATGCGAGCTCCGGCGGCGGCGGCGCTGGCCAACTT
TGTGCGATCAAGACTCGACCACTTGAGCTGCTCGTCTGTAACATGCTCACCGGGAACACGTCGTCGCCTCCTACCCTGAG
CTTCTGCGACGACGACTTCACCTACCCGCCCGCCTTGCTCACCGTCGCCGGCGCCGGCGCCGGCTGTTCCTTCGAGCTGC
TCGTCGCCGACAGTCACCTGACAACGCAGACGTACCAATCACAGAACGGTAAATGGGGCGCCCGCCGTGCCATCGCCATG
CCCCCGGACCACCCGCGGCTCGGCGCGCGGGTGGACGGCTGCAGCGCCGCCGTCACCGGACGAACCGTACACTGGCTCTG
CCATAAATCCCGACCAAACTCCGGCGAACACGCGTTCGTCGTCCTCTCCGTCGACGCCGACACCGCCCGGGGGACGGTGA
CGGAGCTGCCGCGTGAATGCATTGGCGGGAAGACCGGCGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis