Browse Element(s) Details


Os.33461.1.S1_at

Description gb:AK100507.1
DB_XREF= gi:32985716
TID=Os.33461.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33461 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative oxidoreductase (OSJNBa0070N04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099L20, full insert sequence.
FL= gb:AK100507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g563908/11radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33461.1.S1_at--101--1411Chr03:32089347..32089371 (25 bp)
AGACTAACCTATCTCCAATCATTAC
LOC_Os03g56390
Os.33461.1.S1_at--146--3191Chr03:32089372..32089396 (25 bp)
CAATTTTGTTACCAAGCCCTCGGAT
LOC_Os03g56390
Os.33461.1.S1_at--928--4511Chr03:32089387..32089411 (25 bp)
GCCCTCGGATTGCTTCCTTGAAGGA
LOC_Os03g56390
Os.33461.1.S1_at--1033--5291Chr03:32089406..32089430 (25 bp)
GAAGGACTAACCTATTTTCTAGATT
LOC_Os03g56390
Os.33461.1.S1_at--1041--10051Chr03:32089435..32089459 (25 bp)
TAGTCAAAATTTTGCGGTGGCCTTT
LOC_Os03g56390
Os.33461.1.S1_at--246--3591NONE
CATTTCATGGATCTGCCTGTGTGTA
NONE
Os.33461.1.S1_at--163--3891Chr03:32089478..32089502 (25 bp)
CTGTGTGTATCAATCCGTTCCTGGA
LOC_Os03g56390
Os.33461.1.S1_at--141--6711Chr03:32089494..32089518 (25 bp)
GTTCCTGGATTAATTGTGTACGCCA
LOC_Os03g56390
Os.33461.1.S1_at--340--7431Chr03:32089509..32089533 (25 bp)
GTGTACGCCATAGGCCTATACTAAA
LOC_Os03g56390
Os.33461.1.S1_at--859--3871Chr03:32089553..32089577 (25 bp)
CTGTTTTATTTCTCTGACCAGATGG
NONE
Os.33461.1.S1_at--1145--8811Chr03:32089586..32089610 (25 bp)
TGTTGTGATGTTTTTCGTGATCTTC
NONE
Target Sequence 
AGACTAACCTATCTCCAATCATTACCAATTTTGTTACCAAGCCCTCGGATTGCTTCCTTGAAGGACTAACCTATTTTCTA
GATTTCAATAGTCAAAATTTTGCGGTGGCCTTTTCCATTTCATGGATCTGCCTGTGTGTATCAATCCGTTCCTGGATTAA
TTGTGTACGCCATAGGCCTATACTAAATATTTTACAACATGGAGCTCTGTTTTATTTCTCTGACCAGATGGTTTAAAAAT
GTTGTGATGTTTTTCGTGATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis