Browse Element(s) Details


Os.31426.1.S1_at

Description gb:AK107354.1
DB_XREF= gi:32992563
TID=Os.31426.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0070N04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-H10, full insert sequence.
FL= gb:AK107354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5640011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31426.1.S1_at--206--7891Chr03:32090268..32090292 (25 bp)
GGTTCAGCTGGACGCACATCCGCAG
LOC_Os03g56400
Os.31426.1.S1_at--467--971Chr03:32090091..32090115 (25 bp)
AGGAGCTGCTGAGCCGCCACAGCGA
LOC_Os03g56400
Os.31426.1.S1_at--322--8431Chr03:32090047..32090071 (25 bp)
GGCCTCATCAGCACGCCGGAGAAGA
LOC_Os03g56400
Os.31426.1.S1_at--129--4091Chr03:32090022..32090046 (25 bp)
CGACGCTGCGGGTCATGAAGAACCT
LOC_Os03g56400
Os.31426.1.S1_at--378--4331Chr03:32089962..32089986 (25 bp)
CCATCTCCAAGGTCACGGACAGGGA
LOC_Os03g56400
Os.31426.1.S1_at--845--7631Chr03:32089926..32089950 (25 bp)
GGGACGCCACGAGGTTTCATCATTT
LOC_Os03g56400
Os.31426.1.S1_at--263--10511Chr03:32089911..32089935 (25 bp)
TTCATCATTTCAGGGATGGCCTCTG
LOC_Os03g56400
Os.31426.1.S1_at--675--7991Chr03:32089898..32089922 (25 bp)
GGATGGCCTCTGCTCGTGTAAAGAT
LOC_Os03g56400
Os.31426.1.S1_at--963--6811Chr03:32089816..32089840 (25 bp)
GTTTCATGCAGAGATGTACTCCATT
LOC_Os03g56400
Os.31426.1.S1_at--254--7011Chr03:32089801..32089825 (25 bp)
GTACTCCATTGTAAGCTTGCAAGAA
LOC_Os03g56400
Os.31426.1.S1_at--960--5491Chr03:32089779..32089803 (25 bp)
GAACAGCCAATTCCAATATTCATGA
LOC_Os03g56400
Target Sequence 
GGTTCAGCTGGACGCACATCCGCAGCAAGATCCACGTCTTCGGCGCCGACGACGTGGTGCACCCGCAGAGGGACGCCGTG
TACGCGATGGCGGCGAGGATGTGGGAGGAGATCAAGGGGGCCGGGTTCGTGCCCGACCTGCAGTCCGTCCTGCACGACGT
CGACGACGAGCTCAAGGAGGAGCTGCTGAGCCGCCACAGCGAGAAGCTCGCCANCGCGTTCGGCCTCATCAGCACGCCGG
AGAAGACGACGCTGCGGGTCATGAAGAACCTGCGGGTGTGCAACGACTGCCACGCCGCGATCAAGGCCATCTCCAAGGTC
ACGGACAGGGAGATCATCGTGCGGGACGCCACGAGGTTTCATCATTTCAGGGATGGCCTCTGCTCGTGTAAAGATNTACT
GGTAGGAAAACGTNCATGGTGATTNTTGGCGAGGAANGGGGATATNTGTTTGTTGTTTCATGCAGAGATGTACTCCATTG
TAAGCTTGCAAGAACAGCCAATTCCAATATTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis