Browse Element(s) Details


Os.21038.1.S1_s_at

Description gb:BQ907575
DB_XREF= gi:22306353
DB_XREF=P008H12
CLONE=P008H12
TID=Os.21038.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21038 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5642011/11dehydrogenase, putative, expressed
LOC_Os11g293701/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21038.1.S1_s_at--864--7391Chr03:32102785..32102809 (25 bp)
GTGATGTTGCACCTACAAATCGTTG
LOC_Os03g56420
Os.21038.1.S1_s_at--473--6671Chr03:32102806..32102830 (25 bp)
GTTGCATGTTATGGCATCTTGTACA
LOC_Os03g56420
Os.21038.1.S1_s_at--580--10171Chr03:32102831..32102855 (25 bp)
TATATTACTTCGATTAGGTGACCAG
LOC_Os03g56420
Os.21038.1.S1_s_at--305--6792Chr03:32102872..32102896 (25 bp)
GTTAGTTATTTGAGCTTTTTCCAGA
LOC_Os03g56420
Os.21038.1.S1_s_at--480--3891Chr03:32102914..32102938 (25 bp)
CTGTGGATGTACTCGCTTTTAGGTT
LOC_Os03g56420
Os.21038.1.S1_s_at--379--7691Chr03:32102942..32102966 (25 bp)
GGGTTTGTCTTTAGGCAATGTGTCA
LOC_Os03g56420
Os.21038.1.S1_s_at--954--10051Chr03:32102977..32103001 (25 bp)
TAGTCCTTTTCTGTTTCAGATGCAA
LOC_Os03g56420
Os.21038.1.S1_s_at--930--8251Chr03:32103005..32103029 (25 bp)
GGCAGACAATAGTCTCTACTGTATA
LOC_Os03g56420
Os.21038.1.S1_s_at--537--331Chr03:32103027..32103051 (25 bp)
ATACTACTCTCAGTTTCTTCTTGTT
LOC_Os03g56420
Os.21038.1.S1_s_at--376--9571Chr03:32103042..32103066 (25 bp)
TCTTCTTGTTTCTTAGTCAGCGTCA
LOC_Os03g56420
Os.21038.1.S1_s_at--528--7111Chr03:32103057..32103081 (25 bp)
GTCAGCGTCAGTTATCAAGCTATGC
LOC_Os03g56420
Target Sequence 
GTGATGTTGCACCTACAAATCGTTGCATGTTATGGCATCTTGTACATATATTACTTCGATTAGGTGACCAGTTATTTGTG
TCATATGGTTAGTTATTTGAGCTTTTTCCAGATTTTGGACCATGTACACCCTGTGGATGTACTCGCTTTTAGGTTTGTGG
GTTTGTCTTTAGGCAATGTGTCAGAATGTTTTTTAGTCCTTTTCTGTTTCAGATGCAATCTGGCAGACAATAGTCTCTAC
TGTATACTACTCTCAGTTTCTTCTTGTTTCTTAGTCAGCGTCAGTTATCAAGCTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21038.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis