Browse Element(s) Details


Os.14809.1.S1_at

Description gb:AK067093.1
DB_XREF= gi:32977111
TID=Os.14809.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutamic acid-rich protein (OSJNBa0070N04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096M01, full insert sequence.
FL= gb:AK067093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5643010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein
LOC_Os03g56420Os.17939.2.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420OsAffx.3623.1.S1_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.21038.1.S1_s_at11/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.3.S1_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56420Os.17939.1.S1_x_at10/113+32099176..32103168dehydrogenase, putative, expressed
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14809.1.S1_at--127--6011Chr03:32106970..32106994 (25 bp)
GAGAGCCTGAACATCTCCAAGAAAT
LOC_Os03g56430
Os.14809.1.S1_at--555--5271Chr03:32107034..32107058 (25 bp)
GAATGATACTTCACAGGGACATGCA
LOC_Os03g56430
Os.14809.1.S1_at--334--8131Chr03:32107050..32107074 (25 bp)
GGACATGCAAAACAATCATCCGGAT
LOC_Os03g56430
Os.14809.1.S1_at--1157--4251Chr03:32107069..32107093 (25 bp)
CCGGATGCTAACTCGATGTGGGATT
LOC_Os03g56430
Os.14809.1.S1_at--62--7851Chr03:32107096..32107120 (25 bp)
GGTTGGAACCGCATTTCTGACCTTC
LOC_Os03g56430
Os.14809.1.S1_at--735--4951Chr03:32107106..32107130 (25 bp)
GCATTTCTGACCTTCCGATTGAGAG
LOC_Os03g56430
Os.14809.1.S1_at--1025--7711Chr03:32107168..32107192 (25 bp)
GGTGGCATGATCACAGATGTAGCAA
LOC_Os03g56430
Os.14809.1.S1_at--1088--5211Chr03:32107204..32107228 (25 bp)
GAATTATCAGTACGCCATGGGTGCT
LOC_Os03g56430
Os.14809.1.S1_at--574--9951Chr03:32107214..32107238 (25 bp)
TACGCCATGGGTGCTGTGCCTGTGA
LOC_Os03g56430
Os.14809.1.S1_at--391--7411Chr03:32107250..32107274 (25 bp)
GTGTCAGACTGACTTTGAAACGTGA
LOC_Os03g56430
Os.14809.1.S1_at--353--1551Chr03:32107408..32107432 (25 bp)
AGCATTCTCTGCCTGTCTTGACTAC
NONE
Target Sequence 
GAGAGCCTGAACATCTCCAAGAAATCTCAACATCTGGGTGAAGATTGCACAGCTGAAAATTTGCGAATGATACTTCACAG
GGACATGCAAAACAATCATCCGGATGCTAACTCGATGTGGGATTTCGGTTGGAACCGCATTTCTGACCTTCCGATTGAGA
GAAATGAAGTCGTCAGGGATTTGGAGAAGAACATATTGGGTGGCATGATCACAGATGTAGCAAGGGAGCTAATTGAATTA
TCAGTACGCCATGGGTGCTGTGCCTGTGAGGCCTGAGTGAGTGTCAGACTGACTTTGAAACGTGATACAAGAGTTGATTT
CTGAAAGTGATTGATCTTAGGTTAGATTTGTATATTTACCAAGGTTTTCCAGTAAATATATACATNTATTTTTGCAAGAN
TTCTGTACATAGANGAATTTGTACGTGCGTTGANCANCAGCATTCTCTGCCTGTCTTGACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis