Browse Element(s) Details


OsAffx.25735.1.S1_x_at

Description tigr:9631.m05592
TID=OsAffx.25735.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5700011/11hypothetical protein
LOC_Os03g564905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56970Os.2803.1.S1_a_at1/113+32383301..32387843actin-related protein 7, putative, expressed
LOC_Os03g56974Os.57386.1.S1_at6/113+32395806..32396621hypothetical protein
LOC_Os03g56980NANA3+32402194..32402910transposon protein, putative, unclassified
LOC_Os03g56990OsAffx.10426.1.S1_at11/113+32403911..32408032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g57000OsAffx.25735.1.S1_x_at11/113+32409119..32411140hypothetical protein
LOC_Os03g57000OsAffx.25735.2.S1_x_at7/113+32409119..32411140hypothetical protein
LOC_Os03g57010NANA3+32412705..32413133hypothetical protein
LOC_Os03g57020NANA3+32424108..32424651hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25735.1.S1_x_at--522--7552Chr03:32410548..32410572 (25 bp)
GTGGCCGCTGCATGGAGCTCATCGA
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--157--5751Chr03:32410571..32410595 (25 bp)
GACGGCGAGGAGTTCTATCAGCTGA
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--559--10171Chr03:32410586..32410610 (25 bp)
TATCAGCTGATCACCGGAGACGAGT
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--575--5991Chr03:32410602..32410626 (25 bp)
GAGACGAGTTCGATGGCACGCAGCT
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--450--5812Chr03:32410679..32410703 (25 bp)
GACGCCGGTGAGAGCGACCACGACA
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--542--5031Chr03:32410804..32410828 (25 bp)
GCAGTTCCAGCAGGCGATGCAACAA
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--944--6391Chr03:32410879..32410903 (25 bp)
GATCGATTCGTACATGCAGGCCGCC
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--741--10872Chr03:32410992..32411016 (25 bp)
TTGGCGTTGACGTTAGCGCGAGCAA
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--554--8811Chr03:32411041..32411065 (25 bp)
TGATACGCTCGCACTCCAAGACGGG
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--824--7732Chr03:32411065..32411089 (25 bp)
GGTGGTTTCGCTTGCAGTCTTCTAC
LOC_Os03g57000
OsAffx.25735.1.S1_x_at--435--1152Chr03:32411080..32411104 (25 bp)
AGTCTTCTACCTGCTCTTTGGTGTC
LOC_Os03g57000
Target Sequence 
GTGGCCGCTGCATGGAGCTCATCGACGGCGAGGAGTTCTATCAGCTGATCACCGGAGACGAGTTCGATGGCACGCAGCTC
GGAGAGGAGATCGGTGGAGACGCAAGCGGCGCCGACGAGGAGGAGCCCTCTGACGCCGGTGAGAGCGACCACGACACTGC
TCCCGACGCCGGCGATGGCGAGGCGCACGGCGACAGCGCCGACATGGCAGGCGGGAATAGCGCGGCGGCGGCGGCCGAGC
CGGCGTCCACGTCGTCGCAGTTCCAGCAGGCGATGCAACAAGCGGCGGCTCGGAACCAGGCTGCAGCGGCGATGGTGAGG
GCGGCCGACGCGATCGATTCGTACATGCAGGCCGCCGCCGGCGGGCTGGCGGCGCAGGACGTGGAGGCGCTGTCGCAGGG
AGCCACGGGCCTGCGCGCCATGGCGGCCGCGCCCAGCTTCGCCGTTGGCGTTGACGTTAGCGCGAGCAACACGGCGGCGG
CGGCCTTCCTCCCTGATACGCTCGCACTCCAAGACGGGGTGGTTTCGCTTGCAGTCTTCTACCTGCTCTTTGGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25735.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis