Browse Element(s) Details


Os.2803.1.S1_a_at

Description gb:AK069426.1
DB_XREF= gi:32979450
TID=Os.2803.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative actin (OSJNBa0091J19.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020D04, full insert sequence.
FL= gb:AK069426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g569701/11actin-related protein 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein
LOC_Os03g56940Os.11958.1.S1_at11/113+32364586..32365731expressed protein
LOC_Os03g56942NANA3+32365942..32366361hypothetical protein
LOC_Os03g56944NANA3+32366973..32367597expressed protein
LOC_Os03g56950Os.5178.1.A1_s_at11/113+32371392..32374781Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g56960Os.7686.1.S1_at11/113+32379821..32382915pentatricopeptide, putative, expressed
LOC_Os03g56970Os.2803.1.S1_a_at1/113+32383301..32387843actin-related protein 7, putative, expressed
LOC_Os03g56974Os.57386.1.S1_at6/113+32395806..32396621hypothetical protein
LOC_Os03g56980NANA3+32402194..32402910transposon protein, putative, unclassified
LOC_Os03g56990OsAffx.10426.1.S1_at11/113+32403911..32408032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g57000OsAffx.25735.1.S1_x_at11/113+32409119..32411140hypothetical protein
LOC_Os03g57000OsAffx.25735.2.S1_x_at7/113+32409119..32411140hypothetical protein
LOC_Os03g57010NANA3+32412705..32413133hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006325biological_processestablishment and/or maintenance of chromatin architecture
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009653biological_processmorphogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010227biological_processfloral organ abscission
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0015629cellular_componentactin cytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2803.1.S1_a_at--899--8591Chr03:32387810..32387834 (25 bp)
TGGTCCATCCATCGTTCACAAGAAG
LOC_Os03g56970
Os.2803.1.S1_a_at--440--9011Chr03:32387841..32387865 (25 bp)
TGAATAACAGCTCGCCTTGGAGGCA
NONE
Os.2803.1.S1_a_at--171--5411Chr03:32388073..32388097 (25 bp)
GAAGCTGCGGTTCTGAGCAATTCAT
NONE
Os.2803.1.S1_a_at--461--3151Chr03:32388091..32388115 (25 bp)
AATTCATTAGATTCGGTTGTGCCCG
NONE
Os.2803.1.S1_a_at--1001--4671Chr03:32388115..32388139 (25 bp)
GCGGCTGCCAGGTCCAGTTTAGATG
NONE
Os.2803.1.S1_a_at--393--6771Chr03:32388146..32388170 (25 bp)
GTTACACTTGTTACTAGCCATTCAG
NONE
Os.2803.1.S1_a_at--869--991Chr03:32388217..32388241 (25 bp)
AGGATTGTACCTGGCAACGCTCGTA
NONE
Os.2803.1.S1_a_at--1111--1831Chr03:32388233..32388257 (25 bp)
ACGCTCGTAGGCTGCATTCGTTTGA
NONE
Os.2803.1.S1_a_at--623--91Chr03:32388248..32388272 (25 bp)
ATTCGTTTGATTGTCCGTTCACCGA
NONE
Os.2803.1.S1_a_at--305--9651Chr03:32388284..32388308 (25 bp)
TCAGTTCATTCTGTGATTCTCCCTT
NONE
Os.2803.1.S1_a_at--699--2671Chr03:32388380..32388404 (25 bp)
AAGCGGTATTGTTCTTCCAAGTTGA
NONE
Target Sequence 
TGGTCCATCCATCGTTCACAAGAAGTGCTTCTGAATAACAGCTCGCCTTGGAGGCATGAACACCTTGCACGGGGCGTGGA
TGCACGAATCTACAGTTTACTGGCATGTAGGGGCCTGCCTGCCCTGTGCTTCAACTCGCTGTACTAACTTCCTCTGAAGC
TGCGGTTCTGAGCAATTCATTAGATTCGGTTGTGCCCGCGGCTGCCAGGTCCAGTTTAGATGGTGTTTGTTACACTTGTT
ACTAGCCATTCAGGATGCAGTAGAATCTAACATTGGCATCTATTTATTACAAGTTGTAGAGGATTGTACCTGGCAACGCT
CGTAGGCTGCATTCGTTTGATTGTCCGTTCACCGAGCGTACGGAAATCAGTTCATTCTGTGATTCTCCCTTCCAATTGCT
CTCTGAATTCTGTGTAGCTGTAGTGCTGTGTAGCAAACTACAAGAAAACAAAGCTTAGCTAGAAGCGGTATTGTTCTTCC
AAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2803.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis