Browse Element(s) Details


Os.7686.1.S1_at

Description gb:AK108367.1
DB_XREF= gi:32993576
TID=Os.7686.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0091J19.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D04, full insert sequence.
FL= gb:AK108367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5696011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein
LOC_Os03g56940Os.11958.1.S1_at11/113+32364586..32365731expressed protein
LOC_Os03g56942NANA3+32365942..32366361hypothetical protein
LOC_Os03g56944NANA3+32366973..32367597expressed protein
LOC_Os03g56950Os.5178.1.A1_s_at11/113+32371392..32374781Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g56960Os.7686.1.S1_at11/113+32379821..32382915pentatricopeptide, putative, expressed
LOC_Os03g56970Os.2803.1.S1_a_at1/113+32383301..32387843actin-related protein 7, putative, expressed
LOC_Os03g56974Os.57386.1.S1_at6/113+32395806..32396621hypothetical protein
LOC_Os03g56980NANA3+32402194..32402910transposon protein, putative, unclassified
LOC_Os03g56990OsAffx.10426.1.S1_at11/113+32403911..32408032retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7686.1.S1_at--351--7431Chr03:32380395..32380419 (25 bp)
GTGTTTGCTGGTCACTAACAACTGA
LOC_Os03g56960
Os.7686.1.S1_at--631--631Chr03:32380356..32380380 (25 bp)
ATGCTTATGCCTGTGAGCACTCAGC
LOC_Os03g56960
Os.7686.1.S1_at--275--9551Chr03:32380238..32380262 (25 bp)
TCTATACTGGGATTTGGCACTGGCA
LOC_Os03g56960
Os.7686.1.S1_at--1114--731Chr03:32380171..32380195 (25 bp)
ATGTTAGTCCATTCTGTACTGATCA
LOC_Os03g56960
Os.7686.1.S1_at--413--4291Chr03:32380104..32380128 (25 bp)
CCTCCGTCCCTGCAGAAAGATGAAA
LOC_Os03g56960
Os.7686.1.S1_at--195--1591Chr03:32380073..32380097 (25 bp)
AGCTCTCTGAGGGATGCATCACTGT
LOC_Os03g56960
Os.7686.1.S1_at--1161--9011Chr03:32380009..32380033 (25 bp)
TGCACGGACGCTCATAAGTTTGGAT
LOC_Os03g56960
Os.7686.1.S1_at--503--151Chr03:32379986..32380010 (25 bp)
ATTAGGACGCCATTCGCAGGTGTTT
LOC_Os03g56960
Os.7686.1.S1_at--229--10271Chr03:32379937..32379961 (25 bp)
TTTGCGAGGGCACAGATTCTTTGGT
LOC_Os03g56960
Os.7686.1.S1_at--49--10491Chr03:32379853..32379877 (25 bp)
TTAACCTTGTTGTATCGTCTCGAAT
LOC_Os03g56960
Os.7686.1.S1_at--887--7151Chr03:32379837..32379861 (25 bp)
GTCTCGAATGAATGAAGCTCCTGCT
LOC_Os03g56960
Target Sequence 
GTGTTTGCTGGTCACTAACAACTGATCCATGTGTCAGTTATGCTTATGCCTGTGAGCACTCAGCAAGGCAGCAAACAAGT
TACTCTATCCAAGAAAGCAGATCGTGACTATTATTCTGCTTAGTTCTCACAAAAAGAAAAAAGACTATGATTCTGCTTCT
ATACTGGGATTTGGCACTGGCAGTGATGGTGAATCAGAATGATTTTTTTTATCAGTTTTGCGGAATGTTAGTCCATTCTG
TACTGATCAGTGATCAGAGTGTTGTGTTATAGAGGGCCATCGAAGCAATTCCCTCCGTCCCTGCAGAAAGATGAAAAATN
AAAGCTCTCTGAGGGATGCATCACTGTGAACAGGTAGTCGGCATCACCCCGCCATGCCCATGCACATGCACGGACGCTCA
TAAGTTTGGATTAGGACGCCATTCGCAGGTGTTTTTTTCTTCTTCTTTTTTTTCCTTTTTTTGCGAGGGCACAGATTCTT
TGGTATTCTGGTTCAGGTACTACAGATGTGTATGATTTCATAAGTAAAAGTTTGTATTACAGCTTAACCTTGTTGTATCG
TCTCGAATGAATGAAGCTCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis