Browse Element(s) Details


Os.14921.1.S1_at

Description gb:AK069119.1
DB_XREF= gi:32979143
TID=Os.14921.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003A19, full insert sequence.
FL= gb:AK069119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5693010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein
LOC_Os03g56940Os.11958.1.S1_at11/113+32364586..32365731expressed protein
LOC_Os03g56942NANA3+32365942..32366361hypothetical protein
LOC_Os03g56944NANA3+32366973..32367597expressed protein
LOC_Os03g56950Os.5178.1.A1_s_at11/113+32371392..32374781Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g56960Os.7686.1.S1_at11/113+32379821..32382915pentatricopeptide, putative, expressed
LOC_Os03g56970Os.2803.1.S1_a_at1/113+32383301..32387843actin-related protein 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14921.1.S1_at--661--7251Chr03:32362974..32362998 (25 bp)
GTGCCTTAGGTCAACTCCGGCGAGC
LOC_Os03g56930
Os.14921.1.S1_at--144--8451Chr03:32363026..32363050 (25 bp)
GGCCAGCTGACGTGTACGTGGCATT
LOC_Os03g56930
Os.14921.1.S1_at--402--3991Chr03:32363036..32363060 (25 bp)
CGTGTACGTGGCATTGACCGTGTGC
LOC_Os03g56930
Os.14921.1.S1_at--262--4491Chr03:32363081..32363105 (25 bp)
GCCGGCAGCCATCTACAGATTAATT
LOC_Os03g56930
Os.14921.1.S1_at--99--3412Chr08:177465..177498 (24 bp)
CAGATTAATTACGTACGTGTGTTAA
NONE
Os.14921.1.S1_at--78--8791Chr03:32363115..32363139 (25 bp)
TGTTAAGTAGTAAGTACTTCCTCCG
LOC_Os03g56930
Os.14921.1.S1_at--335--7331Chr03:32363326..32363350 (25 bp)
GTGCAGACCAGGTGCAGTATGTGTT
LOC_Os03g56930
Os.14921.1.S1_at--909--7411Chr03:32363410..32363434 (25 bp)
GTGTTGCTTAAATTATACGTGTCAT
LOC_Os03g56930
Os.14921.1.S1_at--581--191Chr03:32363447..32363471 (25 bp)
ATATTTCTATCACCGTTTTAATTGT
LOC_Os03g56930
Os.14921.1.S1_at--805--8231Chr03:32363485..32363510 (25 bp)
GGCAAATTACCACGCATGCATCTTA
LOC_Os03g56930
Os.14921.1.S1_at--12--9071Chr03:32363505..32363526 (22 bp)
TGCATCTTAGTAAAAGTGCCCCTTA
NONE
Target Sequence 
GTGCCTTAGGTCAACTCCGGCGAGCCCCGTGCCGTCGTTAATTAATTACTCCGGCCAGCTGACGTGTACGTGGCATTGAC
CGTGTGCGNCCATGCATTGGCCGCCGGCGCCGGCAGCCATCTACAGATTAATTACGTACGTGTGTTAAGTAGTAAGTACT
TCCTCCGTTTCACAATATAAATCATTCTAGCATTTTTCATATTCATATTGATGTTAAAGAATCTAGATAAATATATATGT
GGGAAATGCTAAAATGACTTACATTGTAAAACAGAGAGAGTACNAATTAAGATGACTTGCATGTACGTTGTTACGTCAAG
TTGGTATAGTATTTGTGTAATGAACGTGTGTGTGTGCAGACCAGGTGCAGTATGTGTTTGTGGCGAGTGGCGACAAATGC
GTCACGCTCTGTATACGTACGTGTGCAAAAGCTTAACGTGTTGCTTAAATTATACGTGTCATGTTAACAAATATATATTT
CTATCACCGTTTTAATTGTGTATATCTTTGTTGGCAAATTACCACGCATGCATCTTAGTAAAAGTGCCCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis