Browse Element(s) Details


Os.27731.1.S1_at

Description gb:CF333305
DB_XREF= gi:33814883
DB_XREF=JMT--02-C10.b1
CLONE=JMT--02-C10
TID=Os.27731.1
CNT=56
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0091J19.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5687811/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27731.1.S1_at--499--5651Chr03:32338687..32338711 (25 bp)
GACAGAGAGCGAGTGCTTCGCCGTC
LOC_Os03g56878
Os.27731.1.S1_at--653--5991Chr03:32338683..32338707 (25 bp)
GAGAGCGAGTGCTTCGCCGTCCCCG
LOC_Os03g56878
Os.27731.1.S1_at--951--5031Chr03:32337558..32337582 (25 bp)
GCAGAGATCCAAGTAGTCGTTATCA
LOC_Os03g56878
Os.27731.1.S1_at--12--591Chr03:32337552..32337576 (25 bp)
ATCCAAGTAGTCGTTATCAGTAGTG
LOC_Os03g56878
Os.27731.1.S1_at--393--411Chr03:32337537..32337561 (25 bp)
ATCAGTAGTGTGGATGTCTTCTTAC
LOC_Os03g56878
Os.27731.1.S1_at--1051--7991Chr03:32337526..32337550 (25 bp)
GGATGTCTTCTTACATCATGTTGAC
LOC_Os03g56878
Os.27731.1.S1_at--1154--7391Chr03:32337450..32337474 (25 bp)
GTGTAGGAATGTGAAACCTTTTCTG
LOC_Os03g56878
Os.27731.1.S1_at--834--5271Chr03:32337444..32337468 (25 bp)
GAATGTGAAACCTTTTCTGGTTTTG
LOC_Os03g56878
Os.27731.1.S1_at--1145--9451Chr03:32337429..32337453 (25 bp)
TCTGGTTTTGGTTAATTCTAGCTGT
LOC_Os03g56878
Os.27731.1.S1_at--39--9551Chr03:32337413..32337437 (25 bp)
TCTAGCTGTTGAAATGTCTCTGGTT
LOC_Os03g56878
Os.27731.1.S1_at--103--5591Chr03:32337403..32337427 (25 bp)
GAAATGTCTCTGGTTATGTTCCTAG
LOC_Os03g56878
Target Sequence 
GACAGAGAGCGAGTGCTTCGCCGTCCCCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTCAAGA
GGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTCGTTATCAGTAGTGTGGATGTCTTCTTACATCATGTTGACCGGT
GCATTTGGATTGATGGTGCCTTCGGATTCTTGATGTTCCAGTTATTGGTGTAGGAATGTGAAACCTTTTCTGGTTTTGGT
TAATTCTAGCTGTTGAAATGTCTCTGGTTATGTTCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis