Browse Element(s) Details


Os.10894.1.S1_at

Description gb:AK120180.1
DB_XREF= gi:37989803
TID=Os.10894.1
CNT=60
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta-tubulin (OSJNBa0091J19.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033M18, full insert sequence.
FL= gb:D13224.1 gb:AK120180.1 gb:AK061888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5681011/11Tubulin beta-7 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56781OsAffx.3627.1.S1_at11/113+32286203..32287192hypothetical protein
LOC_Os03g56782Os.7131.1.S1_at1/113+32293280..32293495hypothetical protein
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10894.1.S1_at--967--9311Chr03:32313046..32313070 (25 bp)
TCCCAACAACGTCAAATCCAGTGTC
LOC_Os03g56810
Os.10894.1.S1_at--706--3271Chr03:32313049..32313073 (25 bp)
CAACAACGTCAAATCCAGTGTCTGT
LOC_Os03g56810
Os.10894.1.S1_at--59--2471Chr03:32313050..32313074 (25 bp)
AACAACGTCAAATCCAGTGTCTGTG
LOC_Os03g56810
Os.10894.1.S1_at--302--2211Chr03:32313051..32313075 (25 bp)
ACAACGTCAAATCCAGTGTCTGTGA
LOC_Os03g56810
Os.10894.1.S1_at--895--3251Chr03:32313052..32313076 (25 bp)
CAACGTCAAATCCAGTGTCTGTGAC
LOC_Os03g56810
Os.10894.1.S1_at--189--8731Chr03:32313067..32313091 (25 bp)
TGTCTGTGACATTCCGCCCAGGGGG
LOC_Os03g56810
Os.10894.1.S1_at--591--9511Chr03:32313428..32313452 (25 bp)
TCTCTGACGTGCGTGATGGATGTAT
LOC_Os03g56810
Os.10894.1.S1_at--717--3771Chr03:32313429..32313453 (25 bp)
CTCTGACGTGCGTGATGGATGTATG
LOC_Os03g56810
Os.10894.1.S1_at--364--751Chr03:32313447..32313471 (25 bp)
ATGTATGGGTGAGGTTTGCGTCCGT
LOC_Os03g56810
Os.10894.1.S1_at--137--811Chr03:32313451..32313475 (25 bp)
ATGGGTGAGGTTTGCGTCCGTGCTT
LOC_Os03g56810
Os.10894.1.S1_at--579--7751Chr03:32313454..32313478 (25 bp)
GGTGAGGTTTGCGTCCGTGCTTCGT
LOC_Os03g56810
Target Sequence 
TCCCAACAACGTCAAATCCAGTGTCTGTGACATTCCGCCCAGGGGGCTGAAGATGGCGGCGACCTTCGTCGGGAACTCCA
CCTCCATCCAAGAGATGTTCCGCCGGGTCAGCGAGCAGTTCACTGCCATGTTCAGGAGGAAGGCTTTCTTGCACTGGTAC
ACAGGCGAGGGAATGGACGAGATGGAGTTCACCGAGGCAGAGAGCAACATGAACGATCTCGTCGCGGAGTACCAGCAGTA
CCAGGACGCCACAGCCGATGAAGAGTACGAAGACGAAGAGGAAGAAGGCCTGAGGCCGAATAGCATTGAGCCCCATTTGC
CCTTCACAGGTTGTTTTGCCAGTGAAGAGTTTTGTGTCTTTGTGATGCTGTGCTCTTTTTTCTTTCTCTGACGTGCGTGA
TGGATGTATGGGTGAGGTTTGCGTCCGTGCTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis