Browse Element(s) Details


Os.7131.1.S1_at

Description gb:AK107920.1
DB_XREF= gi:32993129
TID=Os.7131.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0010I09.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H03, full insert sequence.
FL= gb:AK107920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g567821/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein
LOC_Os03g56781OsAffx.3627.1.S1_at11/113+32286203..32287192hypothetical protein
LOC_Os03g56782Os.7131.1.S1_at1/113+32293280..32293495hypothetical protein
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7131.1.S1_at--436--1431Chr03:32293596..32293620 (25 bp)
AGAACAGATACTTCTTCTCTCCACC
NONE
Os.7131.1.S1_at--763--1551Chr03:32293562..32293586 (25 bp)
AGCTTCTTCTGTTTCTTGGATCTCA
NONE
Os.7131.1.S1_at--638--4411Chr03:32293533..32293557 (25 bp)
GCCACGCCATTGACGCCATAAGGAG
NONE
Os.7131.1.S1_at--3--7911Chr03:32293467..32293491 (25 bp)
GGTTCGTGCTGGTGATCTCGCTGCC
LOC_Os03g56782
Os.7131.1.S1_at--686--8071Chr03:32293280..32293304 (25 bp)
GGACGGCCCCGAGAATCTCGTCTGA
NONE
Os.7131.1.S1_at--576--9111Chr03:32293235..32293259 (25 bp)
TGCTGAATCGGCTCATTTCTTTTTC
NONE
Os.7131.1.S1_at--675--191Chr03:32293221..32293245 (25 bp)
ATTTCTTTTTCTTGCTATACTGTAC
NONE
Os.7131.1.S1_at--10--10191Chr03:32293206..32293230 (25 bp)
TATACTGTACTGTTCGTGCCGCGGT
NONE
Os.7131.1.S1_at--752--7911Chr03:32293158..32293182 (25 bp)
GGTTGTTCTTCATGTTGAGTTCAGT
NONE
Os.7131.1.S1_at--501--3291Chr03:32293057..32293081 (25 bp)
CACAAATTCGCAATTAGCGCCCAGA
NONE
Os.7131.1.S1_at--478--151Chr03:32293045..32293069 (25 bp)
ATTAGCGCCCAGACAAGTGATTTGA
NONE
Target Sequence 
AGAACAGATACTTCTTCTCTCCACCTGCCTCGCAAGCTTCTTCTGTTTCTTGGATCTCACCTCGCCACGCCATTGACGCC
ATAAGGAGCTTGTGAGAGGTGGTAGCCAAGAAGGAGGAGGAGGAGATGGGGTTCGTGCTGGTGATCTCGCTGCCCTTCAT
CTTCTTCTCCATCCTGCTCGGCTTCGGCTGCTACTTCCTCGGCAAGCACAAGGGCCGCGAGGAGATGCGCACCGGCGTCG
GCGCCCAGGTCTACGGCACGCCNGCTGCCGCCGCNCCGGCGTCGGAGCGCCGCCGCCGGAGCCGTTCACGGCGAAGAAGG
ACGGCCCCGAGAATCTCGTCTGATCAGCCTCGGCTGCTGCTGCTGCTGAATCGGCTCATTTCTTTTTCTTGCTATACTGT
ACTGTTCGTGCCGCGGTGGTGTACATGAAGTGGTTAATTTGGTTGTTCTTCATGTTGAGTTCAGTGTGATAATTTGTAAT
CACAATCTATGTGTTTCTTTTTTTCTTTTGGTAAAATGGGTTCGAATCCAAAATTTGTAATCACAAATTCGCAATTAGCG
CCCAGACAAGTGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis