Browse Element(s) Details


OsAffx.22658.1.S1_at

Description gb:NM_184988.1
DB_XREF= gi:34897061
TID=OsAffx.22658.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0010I09.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5677011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56714OsAffx.13510.1.S1_at11/113+32257582..32258325expressed protein
LOC_Os03g56720OsAffx.22657.1.S1_at7/113+32259268..32260244hypothetical protein
LOC_Os03g56724NANA3+32261045..32262136hypothetical protein
LOC_Os03g56730Os.26576.2.S1_x_at11/113+32264338..32265988expressed protein
LOC_Os03g56730Os.26576.1.S1_at10/113+32264338..32265988expressed protein
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein
LOC_Os03g56781OsAffx.3627.1.S1_at11/113+32286203..32287192hypothetical protein
LOC_Os03g56782Os.7131.1.S1_at1/113+32293280..32293495hypothetical protein
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22658.1.S1_at--809--9531Chr03:32281484..32281508 (25 bp)
TCTACTTCAACGGTTTCTTCGACAC
LOC_Os03g56770
OsAffx.22658.1.S1_at--11--5651Chr03:32281464..32281488 (25 bp)
GACACCATCGGAGTGCTGGAGTTCA
LOC_Os03g56770
OsAffx.22658.1.S1_at--32--2491Chr03:32281435..32281459 (25 bp)
AACACCGGTGTTCAGCTCGATTGAG
LOC_Os03g56770
OsAffx.22658.1.S1_at--403--1591Chr03:32281422..32281446 (25 bp)
AGCTCGATTGAGATCGTCGACCCGA
LOC_Os03g56770
OsAffx.22658.1.S1_at--265--4711Chr03:32281371..32281395 (25 bp)
GCGGCGCACGTCTATCTTGTAGAGT
LOC_Os03g56770
OsAffx.22658.1.S1_at--607--7251Chr03:32281348..32281372 (25 bp)
GTCCGAGGACGAACTATACATGGTG
LOC_Os03g56770
OsAffx.22658.1.S1_at--734--2111Chr03:32281331..32281355 (25 bp)
ACATGGTGTGCTTGCGGATTGACTA
LOC_Os03g56770
OsAffx.22658.1.S1_at--244--5691Chr03:32281311..32281335 (25 bp)
GACTATGAGTTTACCATCTACGATA
LOC_Os03g56770
OsAffx.22658.1.S1_at--157--8931Chr03:32281262..32281286 (25 bp)
TGAGCCGTCAATGGCGCAGAGCCGA
LOC_Os03g56770
OsAffx.22658.1.S1_at--926--10311Chr03:32281215..32281239 (25 bp)
TTTCTAGCTCCGTTGTACTTCGGCG
LOC_Os03g56770
OsAffx.22658.1.S1_at--147--2631Chr03:32281090..32281114 (25 bp)
AACCGAGGTGCATGATCTCATTGAT
LOC_Os03g56770
Target Sequence 
TCTACTTCAACGGTTTCTTCGACACCATCGGAGTGCTGGAGTTCACCCCAACACCGGTGTTCAGCTCGATTGAGATCGTC
GACCCGACCCCGGGAGGATTAGGGGTGACGGGCGCGGCGCACGTCTATCTTGTAGAGTCCGAGGACGAACTATACATGGT
GTGCTTGCGGATTGACTATGAGTTTACCATCTACGATATGACAGTCCACAAGATGGATTTCTTGAGCCGTCAATGGCGCA
GAGCCGACGAGATTGGCGGCCGCGCATTCTTTCTAGCTCCGTTGTACTTCGGCGCTTCATGTTCGGCTGATGAGTACGGG
CTTGAGAAGGATTCTGTGTATGCCTCGTATGCAGTGGATAAATGTTTTGAGGTATCCAAGGTGGAAGATGATGAAACCGA
GGTGCATGATCTCATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis