Browse Element(s) Details


Os.26576.2.S1_x_at

Description gb:NM_184984.1
DB_XREF= gi:34897053
TID=Os.26576.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0010I09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0010I09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5673011/11expressed protein
LOC_Os03g567101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56700OsAffx.25737.1.S1_at11/113+32246007..32247298expressed protein
LOC_Os03g56700OsAffx.25737.1.S1_x_at11/113+32246007..32247298expressed protein
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56714OsAffx.13510.1.S1_at11/113+32257582..32258325expressed protein
LOC_Os03g56720OsAffx.22657.1.S1_at7/113+32259268..32260244hypothetical protein
LOC_Os03g56724NANA3+32261045..32262136hypothetical protein
LOC_Os03g56730Os.26576.2.S1_x_at11/113+32264338..32265988expressed protein
LOC_Os03g56730Os.26576.1.S1_at10/113+32264338..32265988expressed protein
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein
LOC_Os03g56781OsAffx.3627.1.S1_at11/113+32286203..32287192hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26576.2.S1_x_at--1136--5951Chr03:32264961..32264985 (25 bp)
GAGAAGGCGCCGATAACCTCGATCG
LOC_Os03g56730
Os.26576.2.S1_x_at--543--851Chr03:32264909..32264933 (25 bp)
ATGGCAGATTCAACAGCATCCGCGT
LOC_Os03g56730
Os.26576.2.S1_x_at--726--6751Chr03:32264860..32264884 (25 bp)
GTTCAGCTTCATCGCAATCACGGAA
LOC_Os03g56730
Os.26576.2.S1_x_at--187--3051Chr03:32264845..32264869 (25 bp)
AATCACGGAACCCTTGGATTTCTGG
LOC_Os03g56730
Os.26576.2.S1_x_at--329--4591Chr03:32264819..32264843 (25 bp)
GCGCAGCTAGCGTATTCTTGGTGGA
LOC_Os03g56730
Os.26576.2.S1_x_at--925--2651Chr03:32264770..32264794 (25 bp)
AAGCCAGCTGTTTGACTACAACCTC
LOC_Os03g56730
Os.26576.2.S1_x_at--718--2091Chr03:32264741..32264765 (25 bp)
ACATCTGCGATGTCACTGTTCATAA
LOC_Os03g56730
Os.26576.2.S1_x_at--53--7811Chr03:32264670..32264694 (25 bp)
GGTCGTACGTTCTTGATAGCTCCAT
LOC_Os03g56730
Os.26576.2.S1_x_at--1036--9211Chr03:32264650..32264674 (25 bp)
TCCATGTTATTTCGGTGCTTCACGT
LOC_Os03g56730
Os.26576.2.S1_x_at--942--7771Chr03:32264637..32264661 (25 bp)
GGTGCTTCACGTTCGGCCAATGAGT
LOC_Os03g56730
Os.26576.2.S1_x_at--918--6912Chr03:32264524..32264548 (25 bp)
GTATGATCTCATCGAAGCTCCAAAT
LOC_Os03g56730
Target Sequence 
GAGAAGGCGCCGATAACCTCGATCGCTGCTTGCCAAGGCAAGTTCTACTTCAATGGCAGATTCAACAGCATCCGCGTGCT
GGAGTTCACCCCAGAGCCGACGTTCAGCTTCATCGCAATCACGGAACCCTTGGATTTCTGGGGCGCAGCTAGCGTATTCT
TGGTGGAGTCAGAGGGCGAACTATACATGGTAAGCCAGCTGTTTGACTACAACCTCGAGTACATCTGCGATGTCACTGTT
CATAAGATGGATTTCTCCAAGCATCAATGGTGCACAGCCGAGGACATCGGTGGTCGTACGTTCTTGATAGCTCCATGTTA
TTTCGGTGCTTCACGTTCGGCCAATGAGTGTGGGCTGGAGAAGGATTGTGTCTACGCTATTTTTGTGCGTTATAAATATT
TTGAGGTATCCAAGGTAGAGGATGGAGAAACCGAAGAGTATGATCTCATCGAAGCTCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26576.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis