Browse Element(s) Details


OsAffx.22657.1.S1_at

Description tigr:9631.m05556
TID=OsAffx.22657.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g567207/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56700OsAffx.25737.1.S1_at11/113+32246007..32247298expressed protein
LOC_Os03g56700OsAffx.25737.1.S1_x_at11/113+32246007..32247298expressed protein
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56714OsAffx.13510.1.S1_at11/113+32257582..32258325expressed protein
LOC_Os03g56720OsAffx.22657.1.S1_at7/113+32259268..32260244hypothetical protein
LOC_Os03g56724NANA3+32261045..32262136hypothetical protein
LOC_Os03g56730Os.26576.2.S1_x_at11/113+32264338..32265988expressed protein
LOC_Os03g56730Os.26576.1.S1_at10/113+32264338..32265988expressed protein
LOC_Os03g56740OsAffx.13512.1.S1_at11/113+32268118..32274016hypothetical protein
LOC_Os03g56740OsAffx.29281.1.S1_at1/113+32268118..32274016hypothetical protein
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22657.1.S1_at--218--4651Chr03:32259896..32259920 (25 bp)
GCGTATGTGTACCTTGTTGAGTCTG
LOC_Os03g56720
OsAffx.22657.1.S1_at--628--9171Chr03:32259851..32259875 (25 bp)
TGCCTGCGGCTTGACCATGACTTCA
LOC_Os03g56720
OsAffx.22657.1.S1_at--777--4331Chr03:32259837..32259861 (25 bp)
CCATGACTTCACCATCTACGATATG
LOC_Os03g56720
OsAffx.22657.1.S1_at--793--9731Chr03:32259783..32259807 (25 bp)
TCAATGGCGCAGAGTGTATGAGATT
LOC_Os03g56720
OsAffx.22657.1.S1_at--927--10311Chr03:32259743..32259767 (25 bp)
TTTCTAGCTCCGTTCTATTTTGGCG
LOC_Os03g56720
OsAffx.22657.1.S1_at--1131--4231Chr03:32259734..32259758 (25 bp)
CCGTTCTATTTTGGCGCTTCATGTT
LOC_Os03g56720
OsAffx.22657.1.S1_at--764--5791Chr03:32259623..32259647 (25 bp)
GACGCAACCGATGTGCATGAGCTCA
LOC_Os03g56720
OsAffx.22657.1.S1_at--895--6511Chr03:32258682..32258706 (25 bp)
GATATTTGGGATGGATCCTCTCCCT
NONE
OsAffx.22657.1.S1_at--198--2211Chr03:32258539..32258563 (25 bp)
ACAACAGCATCCCTGTTTCTTGTCT
NONE
OsAffx.22657.1.S1_at--902--6831Chr03:32258525..32258549 (25 bp)
GTTTCTTGTCTCTTTTACCTCACCA
NONE
OsAffx.22657.1.S1_at--998--4291Chr03:32258508..32258532 (25 bp)
CCTCACCACGAAAATTGGCCTTTTG
NONE
Target Sequence 
GCGTATGTGTACCTTGTTGAGTCTGAGGATGAACTATACATGGTCTGCCTGCGGCTTGACCATGACTTCACCATCTACGA
TATGACCGTCCACAGGATGGATTTCTTCAGCCATCAATGGCGCAGAGTGTATGAGATTGGGGGTCGTGCATTCTTTCTAG
CTCCGTTCTATTTTGGCGCTTCATGTTCGGCTGATGAGTACGGGCTCGAGAAGGATTCTGTGTATGCCTCGTATGCACTG
GATAAGTGTTTTGAGGTATCCAAGGTAGAAGATGACGCAACCGATGTGCATGAGCTCATCGATGCTCCAGACTCGAGAAG
AGGGATGTGGATTTTGCCCATGAAGTATAAGAACACGATATTTGGGATGGATCCTCTCCCTGTGCCCTGTCTCGCCTTGC
AGCAGCAGCAGCAGCACGGCCTGGAATCAGTAAAGACGACACTGTTCAACATCTTCGAGGGACAGGACATCGCCTGCGAC
ATCGATGCCCTGACGAACAACAACAGCATCCCTGTTTCTTGTCTCTTTTACCTCACCACGAAAATTGGCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis