Browse Element(s) Details


Os.4738.2.S1_x_at

Description gb:AK061643.1
DB_XREF= gi:32971661
TID=Os.4738.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative inosine monophosphate dehydrogenase (OSJNBa0091J19.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B05, full insert sequence.
FL= gb:AK061643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5680011/11inosine-5'-monophosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein
LOC_Os03g56781OsAffx.3627.1.S1_at11/113+32286203..32287192hypothetical protein
LOC_Os03g56782Os.7131.1.S1_at1/113+32293280..32293495hypothetical protein
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006177biological_processGMP biosynthesis
GO:0003938molecular_functionIMP dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4738.2.S1_x_at--8--1291Chr03:32308763..32308787 (25 bp)
AGATCTTGGTGCGTCATCTTTGCAG
LOC_Os03g56800
Os.4738.2.S1_x_at--46--5911Chr03:32308797..32308821 (25 bp)
GAGCTGCTGCGATCGGAGACTATCA
LOC_Os03g56800
Os.4738.2.S1_x_at--402--2671Chr03:32309757..32309781 (25 bp)
AAGCGGCTATTGCATCCTAAGGAAA
LOC_Os03g56800
Os.4738.2.S1_x_at--177--8811Chr03:32309786..32309810 (25 bp)
TGTTCCCTATCTTTACCTGATCAAT
LOC_Os03g56800
Os.4738.2.S1_x_at--1065--5491Chr03:32309820..32309844 (25 bp)
GAACAGCTCGTCTGCTTGATGAACC
LOC_Os03g56800
Os.4738.2.S1_x_at--424--5431Chr03:32309840..32309864 (25 bp)
GAACCTGGCATGCTGTTTCATCGGT
LOC_Os03g56800
Os.4738.2.S1_x_at--262--10331Chr03:32309855..32309879 (25 bp)
TTTCATCGGTCGGTAGCATCACCAT
LOC_Os03g56800
Os.4738.2.S1_x_at--626--5391Chr03:32309938..32309962 (25 bp)
GAAGCTATCCCATGATTTGCCTCAA
LOC_Os03g56800
Os.4738.2.S1_x_at--319--4751Chr03:32309972..32309996 (25 bp)
GCTGATGTACTTTGCCTTTTTGTGC
LOC_Os03g56800
Os.4738.2.S1_x_at--909--5131Chr03:32310009..32310033 (25 bp)
GCAAACTCATCCTGTTGTAGCGAAT
LOC_Os03g56800
Os.4738.2.S1_x_at--623--6791Chr03:32310108..32310132 (25 bp)
GTTATCGTTGCTTGCTTTTGTTTCC
LOC_Os03g56800
Target Sequence 
AGATCTTGGTGCGTCATCTTTGCAGTCAGCTCATGAGCTGCTGCGATCGGAGACTATCAAATTAGAGGTGAGGACTGGCG
CCGCGCAAGTTGAAGGGGGGATACATGGGCTAGTGTCGTACGAGAAGAAGGCATTCTAGTTCCAGATTTAATCAAGCATC
AGGACAAAGCGGCTATTGCATCCTAAGGAAACAACTGTTCCCTATCTTTACCTGATCAATGATTTTCAAGAACAGCTCGT
CTGCTTGATGAACCTGGCATGCTGTTTCATCGGTCGGTAGCATCACCATCCGTTTACCATCGCAACGACATGATCGATTG
TGCTTTAACTTCAGTTTTGCTAGAGGGGAAGCTATCCCATGATTTGCCTCAACCGGTTGATGCTGATGTACTTTGCCTTT
TTGTGCAAACTTCCAACCGCAAACTCATCCTGTTGTAGCGAATTCGGCTTATGTTTTTTTTTTCATGAATAAGAATAAAT
AAGTTTGGTTTGTACTTTCGGCCAATTCGGCCCCAGANGTTATCGTTGCTTGCTTTTGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4738.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis