Browse Element(s) Details


Os.37731.2.S1_at

Description gb:AU097431
DB_XREF= gi:8860113
DB_XREF=AU097431
CLONE=S4924
TID=Os.37731.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0091J19.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5683011/11AFR615Wp, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37731.2.S1_at--149--2251Chr03:32320351..32320375 (25 bp)
AAATTCACCCCGTATGATCCGCTCT
LOC_Os03g56830
Os.37731.2.S1_at--540--4011Chr03:32320341..32320365 (25 bp)
CGTATGATCCGCTCTTAAAATCCCC
LOC_Os03g56830
Os.37731.2.S1_at--1103--6251Chr03:32320309..32320333 (25 bp)
GATGGGTTATTACACTGTCTGGCAA
LOC_Os03g56830
Os.37731.2.S1_at--821--9851Chr03:32320299..32320323 (25 bp)
TACACTGTCTGGCAATGTATTGCTA
LOC_Os03g56830
Os.37731.2.S1_at--830--6871Chr03:32320283..32320307 (25 bp)
GTATTGCTAAATGTCTGTCTCGAAT
LOC_Os03g56830
Os.37731.2.S1_at--196--8711Chr03:32320268..32320292 (25 bp)
TGTCTCGAATTTTGCACATTCATTT
LOC_Os03g56830
Os.37731.2.S1_at--583--5111Chr03:32320255..32320279 (25 bp)
GCACATTCATTTTTGTTTGGTGTAC
LOC_Os03g56830
Os.37731.2.S1_at--402--3112Chr03:32320225..32320249 (25 bp)
AATTTGAATAGGCACAGTTTTACTG
LOC_Os03g56830
Os.37731.2.S1_at--1128--2112Chr03:32320212..32320236 (25 bp)
ACAGTTTTACTGTGGCTAAATTGAT
LOC_Os03g56830
Os.37731.2.S1_at--547--10372Chr03:32320186..32320210 (25 bp)
TTTTTTCACTTGCTGCTGGATTATT
LOC_Os03g56830
Os.37731.2.S1_at--99--3891Chr03:32320171..32320195 (25 bp)
CTGGATTATTGGATGCTGTTGTAAC
LOC_Os03g56830
Target Sequence 
AAATTCACCCCGTATGATCCGCTCTTAAAATCCCCCATATTAGATGGGTTATTACACTGTCTGGCAATGTATTGCTAAAT
GTCTGTCTCGAATTTTGCACATTCATTTTTGTTTGGTGTACATTTCAATTTGAATAGGCACAGTTTTACTGTGGCTAAAT
TGATTTTTTTTCACTTGCTGCTGGATTATTGGATGCTGTTGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37731.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis