Browse Element(s) Details


Os.23297.1.S1_at

Description gb:AK120661.1
DB_XREF= gi:37990284
TID=Os.23297.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0091J19.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158J07, full insert sequence.
FL= gb:AK120661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5686011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23297.1.S1_at--686--3951Chr03:32333327..32333351 (25 bp)
CGGAGTTGGTCCTCGGGAGAATTCA
LOC_Os03g56860
Os.23297.1.S1_at--755--4071Chr03:32333228..32333252 (25 bp)
CGAGCTATCAATCCTTCTGCAGCAG
LOC_Os03g56860
Os.23297.1.S1_at--165--7491Chr03:32333198..32333222 (25 bp)
GTGGGCAAGTCGACACGACGATCAA
LOC_Os03g56860
Os.23297.1.S1_at--983--6451Chr03:32332822..32333203 (25 bp)
GATCAAGGATCAGTATCGCTTCGAT
LOC_Os03g56860
Os.23297.1.S1_at--919--1011Chr03:32332797..32332821 (25 bp)
AGGTTTTCAGATCCTCAGGTTGCTC
LOC_Os03g56860
Os.23297.1.S1_at--187--1011Chr03:32332781..32332805 (25 bp)
AGGTTGCTCATGAAGATCGCCAGTT
LOC_Os03g56860
Os.23297.1.S1_at--825--5351Chr03:32332770..32332794 (25 bp)
GAAGATCGCCAGTTCATTGAATTCT
LOC_Os03g56860
Os.23297.1.S1_at--617--9011Chr03:32332729..32332753 (25 bp)
TGCAATCAGAAATCCTCAGAGCCTT
LOC_Os03g56860
Os.23297.1.S1_at--248--9651Chr03:32332714..32332738 (25 bp)
TCAGAGCCTTGCACGCATACAGCGT
LOC_Os03g56860
Os.23297.1.S1_at--1036--4951Chr03:32332700..32332724 (25 bp)
GCATACAGCGTGAGAAGCTTCCAAA
LOC_Os03g56860
Os.23297.1.S1_at--948--7011Chr03:32332491..32332515 (25 bp)
GTACTTCAAGTACTGTTGCTCTTTA
LOC_Os03g56860
Target Sequence 
CGGAGTTGGTCCTCGGGAGAATTCAGGCGATCTGCCGCCTCTCCGGCCATCGCCAGCTGCAGCTGTTCCATGGGGAGGGG
CTCCGTCGTCTTTCTCCGGCGAGCTATCAATCCTTCTGCAGCAGCGCGTGTGGGCAAGTCGACACGACGATCAAGGATCA
GTATCGCTTCGATAGGTTTTCAGATCCTCAGGTTGCTCATGAAGATCGCCAGTTCATTGAATTCTTGGACAGGATGCTGG
ATGCAATCAGAAATCCTCAGAGCCTTGCACGCATACAGCGTGAGAAGCTTCCAAAAGATCTGAAAATTTTGGACGACGAC
ATATGAGTTAAAAGTNTNTTAAACAGGAATACNTGAATCAAAAGAAACGTGACGGTTTGTGTAGTATAAAGTGACCCTGT
ACTATTNTTAACTTGAGTTTGTGATGCTATTGTTATGATCCAGATTATGGATNAGAACATNGGCCAACTTNATATGTATG
TACTTCAAGTACTGTTGCTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis