Browse Element(s) Details


Os.2820.1.A1_at

Description gb:BI305579
DB_XREF= gi:14980901
DB_XREF=NL_0_N09
CLONE=NL_0_N09
TID=Os.2820.1
CNT=12
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.2820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0091J19.7), mRNA
FL= gb:AK103025.1 gb:AK103023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5690011/11reticulon family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed
LOC_Os03g56850OsAffx.25739.1.S1_at11/113+32328006..32331156pentatricopeptide, putative
LOC_Os03g56860Os.23297.1.S1_at11/113+32332463..32333400expressed protein
LOC_Os03g56869Os.34300.1.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.3.S1_x_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56869Os.34300.1.S1_at10/113+32333874..32336193ribose 5-phosphate isomerase, putative, expressed
LOC_Os03g56878Os.27731.1.S1_at11/113+32337316..32338789NA
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein
LOC_Os03g56940Os.11958.1.S1_at11/113+32364586..32365731expressed protein
LOC_Os03g56942NANA3+32365942..32366361hypothetical protein
LOC_Os03g56944NANA3+32366973..32367597expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2820.1.A1_at--1026--10691Chr03:32341946..32341970 (25 bp)
TTGCCCTTGTCCTTGGAATGGTTGT
LOC_Os03g56900
Os.2820.1.A1_at--155--7491Chr03:32341912..32341936 (25 bp)
GTGGTCCAATTTCTCAAGTGCTCTA
LOC_Os03g56900
Os.2820.1.A1_at--142--9091Chr03:32341809..32341918 (25 bp)
TGCTCTAAGCGGATCTCCTTCTAAA
LOC_Os03g56900
Os.2820.1.A1_at--188--9831Chr03:32341788..32341812 (25 bp)
TAAAGTACCCCGTGTTGAGCTGCCA
LOC_Os03g56900
Os.2820.1.A1_at--355--5391Chr03:32341513..32341695 (25 bp)
GAAGCACTTTGTACTGGCAATCGTT
LOC_Os03g56900
Os.2820.1.A1_at--1091--7571Chr03:32341462..32341486 (25 bp)
GGGCTGGTGCAATTTCTTAACTGTC
LOC_Os03g56900
Os.2820.1.A1_at--150--31Chr03:32341275..32341296 (22 bp)
ATTGGATTTGTTAGCGCTCACACGC
LOC_Os03g56900
Os.2820.1.A1_at--441--3831Chr03:32341251..32341275 (25 bp)
CTGCCCGTGCTCTACGAGAAGTATG
LOC_Os03g56900
Os.2820.1.A1_at--1013--10171Chr03:32341205..32341229 (25 bp)
TATACAATATTCTTGGCCTCCTGCG
LOC_Os03g56900
Os.2820.1.A1_at--197--5231Chr03:32341037..32341061 (25 bp)
GAATTTGTACCATGCTCAGTTGCGT
LOC_Os03g56900
Os.2820.1.A1_at--512--7131Chr03:32340989..32341013 (25 bp)
GTCATCTGAGAGCTGTGTGCTTTCC
LOC_Os03g56900
Target Sequence 
TTGCCCTTGTCCTTGGAATGGTTGTCCAGTTCGTGTGGTCCAATTTCTCAAGTGCTCTAAGCGGATCTCCTTCTAAAGTA
CCCCGTGTTGAGCTGCCAGAAGAGCTGTTTGTGAACATTGCAGTTGCAGTTGGTACCCAAGTAAATAAGTTCTTGAGTTT
TCTTCAGGATGTGTCTTGTGAAAGAAACCTGAAGCACTTTGTACTGGCAATCGTTGGACTGTGGGCTGCGGCTGTTATTG
GGGGCTGGTGCAATTTCTTAACTGTCATTTACATTGGATTTGTTAGCGCTCACACGCTGCCCGTGCTCTACGAGAAGTAT
GAAGATCAAGTTGATGATTTCCTATACAATATTCTTGGCCTCCTGCGTGACCAGTATCAGAAACTTGATCAAGGTGTCTT
GAGCAAGATACCGAAGGGGAACATGAAGTTCAAGAAGAGCGAGTAGATTGTCTGGGTTTTAAGAACTGAAATCATAGATT
AGCTGGGTTTTCNTCAGTGGAATGAATCAAGAATTTGTACCATGCTCAGTTGCGTATTGCAGACATTGGTTGTCAGTTGT
CATCTGAGAGCTGTGTGCTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2820.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis