Browse Element(s) Details


Os.11958.1.S1_at

Description gb:AK070713.1
DB_XREF= gi:32980737
TID=Os.11958.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0091J19.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063G16, full insert sequence.
FL= gb:AK070713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5694011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56890Os.52100.1.S1_at11/113+32339206..32339969expressed protein
LOC_Os03g56900Os.2820.1.A1_at11/113+32340875..32343688reticulon family protein, putative, expressed
LOC_Os03g56904NANA3+32346117..32346965hypothetical protein
LOC_Os03g56910OsAffx.21308.1.S1_at11/113+32350142..32354070retrotransposon protein, putative, LINE subclass
LOC_Os03g56920OsAffx.21308.2.S1_at11/113+32357267..32359357expressed protein
LOC_Os03g56920OsAffx.21308.2.S1_x_at11/113+32357267..32359357expressed protein
LOC_Os03g56930Os.14921.1.S1_at10/113+32362177..32363525expressed protein
LOC_Os03g56940Os.11958.1.S1_at11/113+32364586..32365731expressed protein
LOC_Os03g56942NANA3+32365942..32366361hypothetical protein
LOC_Os03g56944NANA3+32366973..32367597expressed protein
LOC_Os03g56950Os.5178.1.A1_s_at11/113+32371392..32374781Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g56960Os.7686.1.S1_at11/113+32379821..32382915pentatricopeptide, putative, expressed
LOC_Os03g56970Os.2803.1.S1_a_at1/113+32383301..32387843actin-related protein 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11958.1.S1_at--378--9791Chr03:32365131..32365155 (25 bp)
TAAGTTATACCGTTGCTCACGCCGC
LOC_Os03g56940
Os.11958.1.S1_at--931--4051Chr03:32365158..32365182 (25 bp)
CGATGTGTGTACTCCGGCGGCTTAA
LOC_Os03g56940
Os.11958.1.S1_at--34--3951Chr03:32365175..32365199 (25 bp)
CGGCTTAATATAACGTGCCTCCTTA
LOC_Os03g56940
Os.11958.1.S1_at--17--7291Chr03:32365189..32365213 (25 bp)
GTGCCTCCTTACTGTGTGTTAATTA
LOC_Os03g56940
Os.11958.1.S1_at--101--6771Chr03:32365206..32365230 (25 bp)
GTTAATTAAGTACTCCTCCTGTCTA
LOC_Os03g56940
Os.11958.1.S1_at--70--8691Chr03:32365374..32365398 (25 bp)
TGTGCAGTGCAGACCAGGTACGTAC
LOC_Os03g56940
Os.11958.1.S1_at--42--1831Chr03:32365413..32365437 (25 bp)
ACCCAATCTCTGAGTGCTCGCAAAA
LOC_Os03g56940
Os.11958.1.S1_at--96--8671Chr03:32365499..32365523 (25 bp)
TGTGTAACCCACTATTTTATCACTG
LOC_Os03g56940
Os.11958.1.S1_at--515--6171Chr03:32365632..32365656 (25 bp)
GAGGAACTACTCATTTCTGGCCGGA
LOC_Os03g56940
Os.11958.1.S1_at--605--1611Chr03:32365661..32365685 (25 bp)
AGCTGTACTGCTATCGCACAACTTT
LOC_Os03g56940
Os.11958.1.S1_at--799--8991Chr03:32365706..32365730 (25 bp)
TGAATAAAGTGGTCCCTGTTTCCTC
LOC_Os03g56940
Target Sequence 
TAAGTTATACCGTTGCTCACGCCGCCGCGATGTGTGTACTCCGGCGGCTTAATATAACGTGCCTCCTTACTGTGTGTTAA
TTAAGTACTCCTCCTGTCTAAAAAAAATTAACTTCTCTATGAATTTATAGACGTAGTTAGAAGTTGATTTTTTCTTGGAT
GGTAAGAGTACATGTGTTACCGTGTGTTGTTACGTTAAGTTGGTAATTTGTGTACTGATGAATCGTGTGTGTATGATGTG
CACTGTGCAGTGCAGACCAGGTACGTACGTGTGGGTCGCGTCACCCAATCTCTGAGTGCTCGCAAAATTTAATGTGCTTA
ATGCACGAATTAATTATACGTCGAATATTATAGGTTTTAATTTAATCTTGTGTAACCCACTATTTTATCACTGTTTGAAC
TTTGAATCATACGTGTCTATTTTTGTTGGGATATTAGTCTTGCTAAGGTGCATAGGAATGAAAATCATATTAGTCATGTT
TTAGTTAGTAAAGGCCGAGTTGAGGAACTACTCATTTCTGGCCGGACAATAGCTGTACTGCTATCGCACAACTTTGTTTG
TGTCGATGCTTTGATTGAATAAAGTGGTCCCTGTTTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis