Browse Element(s) Details


Os.2813.1.S1_at

Description gb:AK073162.1
DB_XREF= gi:32983185
TID=Os.2813.1
CNT=77
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative actin-depolymerizing factor (OSJNBa0091J19.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024B06, full insert sequence.
FL= gb:AK073162.1 gb:AK061347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5679011/11Actin-depolymerizing factor 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56750OsAffx.13513.1.S1_at11/113+32275092..32276098hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_x_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56760OsAffx.25738.2.S1_at11/113+32277541..32278496hypothetical protein
LOC_Os03g56770OsAffx.22658.1.S1_at11/113+32279719..32281995hypothetical protein
LOC_Os03g56780OsAffx.22657.2.S1_at11/113+32282946..32284224hypothetical protein
LOC_Os03g56781OsAffx.3627.1.S1_at11/113+32286203..32287192hypothetical protein
LOC_Os03g56782Os.7131.1.S1_at1/113+32293280..32293495hypothetical protein
LOC_Os03g56783NANA3+32295958..32296807hypothetical protein
LOC_Os03g56784NANA3+32298320..32298708hypothetical protein
LOC_Os03g56790Os.2813.1.S1_at11/113+32299508..32302773Actin-depolymerizing factor 6, putative, expressed
LOC_Os03g56800Os.4738.2.S1_x_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56800Os.4738.1.S1_at11/113+32304690..32310137inosine-5'-monophosphate dehydrogenase, putative, expressed
LOC_Os03g56810Os.10894.1.S1_s_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56810Os.10894.1.S1_at11/113+32310694..32313846Tubulin beta-7 chain, putative, expressed
LOC_Os03g56820Os.32736.1.S1_at11/113+32314843..32317399Fatty acid hydroxylase family protein, expressed
LOC_Os03g56830Os.37731.2.S1_at11/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56830Os.37731.1.S1_at10/113+32318861..32322727AFR615Wp, putative, expressed
LOC_Os03g56840Os.2807.1.S1_a_at11/113+32323768..32327085GTP-dependent nucleic acid-binding protein engD, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2813.1.S1_at--549--9791Chr03:32300056..32300080 (25 bp)
TAAGATGCTGTACTCCACCTCCAAG
LOC_Os03g56790
Os.2813.1.S1_at--1049--6571Chr03:32300006..32300030 (25 bp)
GATTCCACTACGAGATCCAGGCAAC
LOC_Os03g56790
Os.2813.1.S1_at--723--871Chr03:32299988..32300012 (25 bp)
AGGCAACCGACCCAACTGAGGTAGA
LOC_Os03g56790
Os.2813.1.S1_at--460--8851Chr03:32299918..32299942 (25 bp)
TGATCGATCACCTGCGAATCTCAAG
LOC_Os03g56790
Os.2813.1.S1_at--273--2771Chr03:32299891..32299915 (25 bp)
AAGACGCAAATTCATCCTATCAGTG
LOC_Os03g56790
Os.2813.1.S1_at--16--631Chr03:32299866..32299890 (25 bp)
ATGCTCCCTTGCGATACTATTGTTA
LOC_Os03g56790
Os.2813.1.S1_at--1002--10331Chr03:32299780..32299804 (25 bp)
TTTAGCCTTGCCTGCATGATTCTAG
LOC_Os03g56790
Os.2813.1.S1_at--1123--6511Chr03:32299733..32299757 (25 bp)
GATTTACCCGTATGAGGTCTCAGAG
LOC_Os03g56790
Os.2813.1.S1_at--1004--6511Chr03:32299653..32299676 (24 bp)
GATTACTGGGTGTGGATTGTCCTAA
LOC_Os03g56790
Os.2813.1.S1_at--498--10811Chr03:32299602..32299626 (25 bp)
TTGTCTCGTGTCATTCTGGAACATT
LOC_Os03g56790
Os.2813.1.S1_at--872--9991Chr03:32299573..32299597 (25 bp)
TAGCTGGAATCACCTTATGGCCACC
LOC_Os03g56790
Target Sequence 
TAAGATGCTGTACTCCACCTCCAAGGATCGCATCAAGCAAGAACTTGATGGATTCCACTACGAGATCCAGGCAACCGACC
CAACTGAGGTAGACCTTGAGGTCCTCCGGGAGCGGGCTCATTAAGGCCCTGGCCCTGATGATCGATCACCTGCGAATCTC
AAGTCAAGACGCAAATTCATCCTATCAGTGATGCTCCCTTGCGATACTATTGTTAATAAGAAAGATATCCATGTTTCCTG
TAAAACGTATCCCCACCATCATCATCATCATCATCGTTTAGCCTTGCCTGCATGATTCTAGCTGCAGATGGAGTGTTGTC
GGAGATTTACCCGTATGAGGTCTCAGAGCCTGTAAAACGTATGAAACACCCTCTCCCAAACTCTTATATTGTGGTATTAA
TATGGATTACTGGGTGTGGATTGTCCTAANATGTTTTTTNGTCNGCTTTGCCNNNNNTTGTCTCGTGTCATTCTGGAACA
TTATGCTAGCTGGAATCACCTTATGGCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis