Browse Element(s) Details


OsAffx.25735.2.S1_x_at

Description tigr:9631.m05528
TID=OsAffx.25735.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5649011/11hypothetical protein
LOC_Os03g570007/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56430Os.14809.1.S1_at10/113+32103817..32107382expressed protein
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25735.2.S1_x_at--521--7552Chr03:32410548..32410572 (25 bp)
GTGGCCGCTGCATGGAGCTCATCGA
LOC_Os03g57000
OsAffx.25735.2.S1_x_at--255--3532Chr03:32410567..32410591 (25 bp)
CATCGACGGCGAGGAGTTCTATCAG
LOC_Os03g57000
OsAffx.25735.2.S1_x_at--1083--972Chr03:32410578..32410605 (25 bp)
AGGAGTTCTATCAGCTCACCGGAGA
LOC_Os03g57000
OsAffx.25735.2.S1_x_at--576--5991Chr03:32129409..32129433 (25 bp)
GAGACGAGTTCGATGCCACGCAGCT
LOC_Os03g56490
OsAffx.25735.2.S1_x_at--449--5812Chr03:32410679..32410703 (25 bp)
GACGCCGGTGAGAGCGACCACGACA
LOC_Os03g57000
OsAffx.25735.2.S1_x_at--24--5031Chr03:32129207..32129231 (25 bp)
GCAGTTCCGGCAGGCGATGCAACAA
LOC_Os03g56490
OsAffx.25735.2.S1_x_at--265--3931Chr03:32129142..32129166 (25 bp)
CGGCCGACGTGATCGATTCGTACAT
LOC_Os03g56490
OsAffx.25735.2.S1_x_at--740--10872Chr03:32410992..32411016 (25 bp)
TTGGCGTTGACGTTAGCGCGAGCAA
LOC_Os03g57000
OsAffx.25735.2.S1_x_at--553--8811Chr03:32128961..32128985 (25 bp)
TGATACGCTCGCACGCCAAGACGGG
LOC_Os03g56490
OsAffx.25735.2.S1_x_at--823--7732Chr03:32411065..32411089 (25 bp)
GGTGGTTTCGCTTGCAGTCTTCTAC
LOC_Os03g57000
OsAffx.25735.2.S1_x_at--434--1152Chr03:32411080..32411104 (25 bp)
AGTCTTCTACCTGCTCTTTGGTGTC
LOC_Os03g57000
Target Sequence 
GTGGCCGCTGCATGGAGCTCATCGACGGCGAGGAGTTCTATCAGCTCACCGGAGACGAGTTCGATGCCACGCAGCTCGGA
GAGGAGATCGGTGGCGACGCAAGCGGCGTTGACGGGGAGGAGCCCTCTGACGCCGGTGAGAGCGACCACGACACTGCTCC
CGACGCCGGCGATGGCGAGGCGCACGGCAACAGCGCCGACATGGCAGGCGAGAATAGCGCGGCGGCGACGGCCGAGCCGG
CGTCCACGCCGTCGCAGTTCCGGCAGGCGATGCAACAAGCGGCGGCGCGGGACCAGGCTGCAGAGGCGATGGTGAGGGCG
GCCGACGTGATCGATTCGTACATGCGGGCCGCCGCCGGCGGGCTGGCGGCGCACGACGTGGAGGCGCTGTCGCAGGGAGC
CACGAGCCTGCGCGCCATGGCGGCCGCGCCCAGCTTCGCCGTTGGCGTTGACGTTAGCGCGAGCAACGCGGCGGCGGCGA
CTGCGGCGGCCTTCCTCCCTGATACGCTCGCACGCCAAGACGGGGTGGTTTCGCTTGCAGTCTTCTACCTGCTCTTTGGT
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25735.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis