Browse Element(s) Details


Os.27147.1.S1_at

Description gb:AK106237.1
DB_XREF= gi:32991446
TID=Os.27147.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0070N04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C07, full insert sequence.
FL= gb:AK106237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5650011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56440OsAffx.22667.1.S1_at11/113+32108130..32109149F-box domain containing protein
LOC_Os03g56450OsAffx.22666.1.S1_at11/113+32109465..32110868F-box domain containing protein
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27147.1.S1_at--16--4511Chr03:32133077..32133101 (25 bp)
GCCGTCGCAGAGATACTGCAACCAT
LOC_Os03g56500
Os.27147.1.S1_at--1049--1851Chr03:32133026..32133050 (25 bp)
ACGACGTCCACGGAGATCGTGGCGT
LOC_Os03g56500
Os.27147.1.S1_at--1092--3331Chr03:32133018..32133042 (25 bp)
CACGGAGATCGTGGCGTCCCAGCAG
LOC_Os03g56500
Os.27147.1.S1_at--576--8051Chr03:32133015..32133039 (25 bp)
GGAGATCGTGGCGTCCCAGCAGCAC
LOC_Os03g56500
Os.27147.1.S1_at--1072--9411Chr03:32133010..32133034 (25 bp)
TCGTGGCGTCCCAGCAGCACGACGA
LOC_Os03g56500
Os.27147.1.S1_at--196--1091Chr03:32132965..32132989 (25 bp)
AGGGCTCGCGCGCTGTTGTCGCCGC
LOC_Os03g56500
Os.27147.1.S1_at--567--3931Chr03:32132941..32132965 (25 bp)
CGGCGAATGCACCACTCCGGCTGGA
LOC_Os03g56500
Os.27147.1.S1_at--616--5271Chr03:32132937..32132961 (25 bp)
GAATGCACCACTCCGGCTGGACGAC
LOC_Os03g56500
Os.27147.1.S1_at--52--4571Chr03:32132853..32132877 (25 bp)
GCGCCTGGTGGCGTTCGACGCGCGG
LOC_Os03g56500
Os.27147.1.S1_at--944--5411Chr03:32132697..32132721 (25 bp)
GAAGCCGCCGGCTGATCCATGAAGT
LOC_Os03g56500
Os.27147.1.S1_at--99--1671Chr03:32132695..32132719 (25 bp)
AGCCGCCGGCTGATCCATGAAGTGG
LOC_Os03g56500
Target Sequence 
GCCGTCGCAGAGATACTGCAACCATCTCAGCCGCCGCCGCCGGCAAGGGCGACGACGTCCACGGAGATCGTGGCGTCCCA
GCAGCACGACGAGTCCGGCGCGGAGGAGGAGGAGGGCTCGCGCGCTGTTGTCGCCGCGGCGAATGCACCACTCCGGCTGG
ACGACGGGGTGCGGCTGCTGGGTTTCCAGGGCGCGGAGGTGGAGGTGGTGGTGCTGGCAGGGAGGCGCCTGGTGGCGTTC
GACGCGCGGACGCGGCGGCGGCGCGAGGTCGCCGTGCCGGACGAGGTCGACGCGGCATGGGACGGCGCGGAGCACGCTGC
GCACATCAACACCCTCGCGCTGATCGCGCCCGCCGCTCTCGCGGCCGAGCCGCCGCTCGCGAAGCCGCCGGCTGATCCAT
GAAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis