Browse Element(s) Details


OsAffx.22664.1.S1_at

Description gb:NM_184914.1
DB_XREF= gi:34896917
GEN=OSJNBa0070N04.24
TID=OsAffx.22664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0070N04.24), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5653010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56460Os.154.1.S1_at11/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56460Os.57457.1.S1_x_at9/113+32114232..32121040Glucose-6-phosphate isomerase, cytosolic A, putative, expressed
LOC_Os03g56470Os.45026.1.S1_at11/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56470OsAffx.28262.1.S1_x_at1/113+32121818..32124206Protein kinase domain containing protein, expressed
LOC_Os03g56480OsAffx.25734.1.S1_at11/113+32126272..32128185hypothetical protein
LOC_Os03g56490OsAffx.25735.2.S1_x_at11/113+32128886..32131099hypothetical protein
LOC_Os03g56490OsAffx.25735.1.S1_x_at5/113+32128886..32131099hypothetical protein
LOC_Os03g56500Os.17985.1.S1_s_at11/113+32132503..32134032expressed protein
LOC_Os03g56500Os.27147.1.S1_at11/113+32132503..32134032expressed protein
LOC_Os03g56510OsAffx.25736.1.S1_at11/113+32135324..32136445F-box domain containing protein
LOC_Os03g56520OsAffx.3624.1.S1_at11/113+32139531..32140222hypothetical protein
LOC_Os03g56530OsAffx.22664.1.S1_at10/113+32140799..32146457retrotransposon protein, putative, unclassified
LOC_Os03g56540Os.5581.1.S1_at10/113+32147828..32149791DNAJ protein, putative, expressed
LOC_Os03g56560NANA3+32159327..32162255retrotransposon protein, putative, unclassified
LOC_Os03g56566NANA3+32162585..32163992retrotransposon protein, putative, unclassified
LOC_Os03g56572NANA3+32164105..32168709retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22664.1.S1_at--645--5813Chr11:6401245..6401265 (21 bp)
GACCGCGTCGGTAGCGTTCGTTACG
NONE
OsAffx.22664.1.S1_at--370--6971Chr11:6401255..6401567 (25 bp)
GTAGCGTTCGTTACGCACGCAAGGT
NONE
OsAffx.22664.1.S1_at--1050--6131Chr03:32145934..32145958 (25 bp)
GAGGGTCTAGCACTAACACCTACGG
LOC_Os03g56530
OsAffx.22664.1.S1_at--434--8351Chr03:32145992..32146016 (25 bp)
GGCGGCCAGGACGATCGATCTGCCA
LOC_Os03g56530
OsAffx.22664.1.S1_at--787--8651Chr03:32146039..32146063 (25 bp)
TGGGCTGCAGCAACGCCAAGAGCAT
LOC_Os03g56530
OsAffx.22664.1.S1_at--274--7911Chr03:32146234..32146258 (25 bp)
GGAGATTGTACCAGACCGTCTTCTT
LOC_Os03g56530
OsAffx.22664.1.S1_at--744--8251Chr03:32146281..32146305 (25 bp)
GGCACCGTGCTGATGAGGATCGTCA
LOC_Os03g56530
OsAffx.22664.1.S1_at--850--9711Chr03:32146303..32146327 (25 bp)
TCAACGTCGGGCTCGTGCAGCTCGC
LOC_Os03g56530
OsAffx.22664.1.S1_at--1087--9031Chr03:32146318..32146342 (25 bp)
TGCAGCTCGCCGTAGCAACGAAGAA
LOC_Os03g56530
OsAffx.22664.1.S1_at--1103--1031Chr03:32146386..32146410 (25 bp)
AGGTCCATGTCCAGGGCGTGCTTGC
LOC_Os03g56530
OsAffx.22664.1.S1_at--150--4011Chr03:32146402..32146426 (25 bp)
CGTGCTTGCACGAGATGAATTTGTA
LOC_Os03g56530
Target Sequence 
GACCGCGTCGGTAGCGTTCGTTACGCACGCAAGGTGTTCGATCGAGGGTCTAGCACTAACACCTACGGCGTGCGCGTCGT
CGCCCTGCACGCCGACACGGCGGCGGCCAGGACGATCGATCTGCCACCGGGGTGCGTCGACAGGATGCTGGGCTGCAGCA
ACGCCAAGAGCATGAGCGAGCTCATGCTGGTCATGTCGCGGGGCGGGGCGGTGTTGAGCCTTGTCATGGCGGAGCGCGAG
GTGATCTCGGTGTGGACGTTGGAGGAGGAGGCAGCGGCGGTGGAGAGGTGGAGCCGGCAGGTGGTGATCGCGAGGGTGGC
GATTGATCGGAGTGTGGAAGCACGGAGATTGTACCAGACCGTCTTCTTCGAGGGGTTCGGGGAGAGAAGCGGCACCGTGC
TGATGAGGATCGTCAACGTCGGGCTCGTGCAGCTCGCCGTAGCAACGAAGAAGGCGATCGTTGTGCGGGACAGCGGCGCC
GGTAAATGGTGGGGCAGGTCCATGTCCAGGGCGTGCTTGCACGAGATGAATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis