Browse Element(s) Details


Os.5651.1.S1_a_at

Description gb:AK066724.1
DB_XREF= gi:32976742
TID=Os.5651.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative N5-nucleotidase (OSJNBb0094O03.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088P07, full insert sequence.
FL= gb:AK062227.1 gb:AK066724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5631011/11HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008253molecular_function5'-nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5651.1.S1_a_at--532--2931Chr03:32036590..32036614 (25 bp)
AAGGAACATGTTCGTCGGCTTCATC
LOC_Os03g56310
Os.5651.1.S1_a_at--324--9311Chr03:32036196..32036354 (25 bp)
TCCCGATTTGCTCATCAGGTCGAGA
LOC_Os03g56310
Os.5651.1.S1_a_at--405--6531Chr03:32036171..32036195 (25 bp)
GATTTGCGTGCCTTTACAGTAGTCA
LOC_Os03g56310
Os.5651.1.S1_a_at--302--2531Chr03:32036139..32036163 (25 bp)
AACTTTGCTTTGTATTCTCCCAACA
LOC_Os03g56310
Os.5651.1.S1_a_at--1--611Chr03:32036088..32036112 (25 bp)
ATGCCCCATGAGTTCGATGTGCTTG
LOC_Os03g56310
Os.5651.1.S1_a_at--39--791Chr03:32036072..32036096 (25 bp)
ATGTGCTTGGGCTGTAGGAGTTCTC
LOC_Os03g56310
Os.5651.1.S1_a_at--1129--3791Chr03:32036050..32036074 (25 bp)
CTCCCGGTCTCCTTGAATAGATTTT
LOC_Os03g56310
Os.5651.1.S1_a_at--668--5931Chr03:32036007..32036031 (25 bp)
GAGCATGATCTTTTGTCCTGTGGCT
LOC_Os03g56310
Os.5651.1.S1_a_at--1089--7531Chr03:32035988..32036012 (25 bp)
GTGGCTCTTACCGTCTAATAACATT
LOC_Os03g56310
Os.5651.1.S1_a_at--1090--5271Chr03:32035919..32035943 (25 bp)
GAATGTTCACCTGTTCTTTTCAAGT
LOC_Os03g56310
Os.5651.1.S1_a_at--858--10151Chr03:32035858..32035882 (25 bp)
TATAGTCGGCCATAGCAGATCAGCA
LOC_Os03g56310
Target Sequence 
AAGGAACATGTTCGTCGGCTTCATCAAGAGGCTCAAAGGCAACATCATCATAAGTTCCATAAAGTGTGGGGGCAACTCAT
GAAGACGGGTTATCAAAACTCCCGATTTGCTCATCAGGTCGAGAGATTTGCGTGCCTTTACAGTAGTCAAGTCACAAACT
TTGCTTTGTATTCTCCCAACAAGTACTACCGTCCAAGCGAAGATTACATGCCCCATGAGTTCGATGTGCTTGGGCTGTAG
GAGTTCTCCCGGTCTCCTTGAATAGATTTTCAGCTTGCATCTGGATAGGAGCATGATCTTTTGTCCTGTGGCTCTTACCG
TCTAATAACATTGTAGTTTCTGTTAATTTTGTAAGCAAGTGTGGGATTAATCTGGTGAATGTTCACCTGTTCTTTTCAAG
TTACCGCTGAAAAAAGAAAGCGAAAGGTTTGTGTAATTATAGTCGGCCATAGCAGATCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5651.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis