Browse Element(s) Details


Os.56243.1.S1_at

Description gb:AK109683.1
DB_XREF= gi:32994892
TID=Os.56243.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D07, full insert sequence.
FL= gb:AK109683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5632011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56243.1.S1_at--421--7611Chr03:32048365..32048389 (25 bp)
GGGAAGCCATAATCATTTTCAAATG
LOC_Os03g56320
Os.56243.1.S1_at--114--9851Chr03:32048405..32048429 (25 bp)
TAAATGTCCTCTTTAGCGGTCAGCC
LOC_Os03g56320
Os.56243.1.S1_at--906--2071Chr03:32048635..32048659 (25 bp)
ACATTGTCATGTGCTGTACTCCTAC
LOC_Os03g56320
Os.56243.1.S1_at--568--7311Chr03:32048645..32048669 (25 bp)
GTGCTGTACTCCTACGAATGAATTC
LOC_Os03g56320
Os.56243.1.S1_at--764--5271Chr03:32048660..32048684 (25 bp)
GAATGAATTCACTTTTTCCAGCTGA
LOC_Os03g56320
Os.56243.1.S1_at--959--10671Chr03:32048675..32048699 (25 bp)
TTCCAGCTGACTAAGTTTGTTACAT
LOC_Os03g56320
Os.56243.1.S1_at--333--10011Chr03:32048723..32048747 (25 bp)
TAGAATCTTTTCTCCATCTCTGTTC
LOC_Os03g56320
Os.56243.1.S1_at--1074--10211Chr03:32048767..32048791 (25 bp)
TATTGCCGCTATGTCATGCATGCAG
LOC_Os03g56320
Os.56243.1.S1_at--630--5031Chr03:32048821..32048845 (25 bp)
GCAGTTTTGGCAATTCCTGATAAAT
LOC_Os03g56320
Os.56243.1.S1_at--319--10271Chr03:32048849..32048873 (25 bp)
TTTGAATGCTCAAGGGTGAATCCCA
LOC_Os03g56320
Os.56243.1.S1_at--38--971Chr03:32048861..32048885 (25 bp)
AGGGTGAATCCCAGAATATTTTCGC
LOC_Os03g56320
Target Sequence 
GGGAAGCCATAATCATTTTCAAATGACTATTCAATGGACCTAAATGTCCTCTTTAGCGGTCAGCCTTCCACCAAATACAA
TCTGCTTCATGGTGTGCCATCCTCTGGGTTTGTCTCCACTGATCTTGGCAATCTCAGTTTATCAAACAGGTTCTGTGGGT
GACATAGCAGCCCAGCGTGCGTGCTTGTAGATCTCCAATTTGTGACCGAGTTACCTGAGAGAACTCAATAGAAGGCAGCA
GGAGATCAGGCCTGTCATGGTAGAAATGGTACATTGTCATGTGCTGTACTCCTACGAATGAATTCACTTTTTCCAGCTGA
CTAAGTTTGTTACATAAGTTTTGTGCTTGAGAAGACATTAGAATCTTTTCTCCATCTCTGTTCAATTCATGTTTTTTTTA
ATTATTGCCGCTATGTCATGCATGCAGATGAAATGCTAGAATATTCATCTGCAATAGCAGTTTTGGCAATTCCTGATAAA
TTTATTTGAATGCTCAAGGGTGAATCCCAGAATATTTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis