Browse Element(s) Details


Os.6210.1.S1_at

Description gb:AK102670.1
DB_XREF= gi:32987879
TID=Os.6210.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase 1 (OSJNBb0094O03.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101P17, full insert sequence.
FL= gb:AK102670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5627011/11Receptor protein kinase CLAVATA1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56260Os.25316.1.S1_at11/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56260Os.25316.2.S1_x_at10/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6210.1.S1_at--997--9211Chr03:32020900..32020924 (25 bp)
TCCAGTTCCTTCTGGGTCTGCAGAA
LOC_Os03g56270
Os.6210.1.S1_at--189--3151Chr03:32020967..32020991 (25 bp)
AATTCAGAGTCAACTACACCTCCTG
LOC_Os03g56270
Os.6210.1.S1_at--106--2331Chr03:32021046..32021070 (25 bp)
AAAGTTCGCAAGCTTCAGTATCGGA
LOC_Os03g56270
Os.6210.1.S1_at--123--6731Chr03:32021114..32021138 (25 bp)
GTTCTGTGCTGTACATATTCCAGTT
LOC_Os03g56270
Os.6210.1.S1_at--461--11Chr03:32021130..32021154 (25 bp)
ATTCCAGTTTGGTGGGTTGTCCTGT
LOC_Os03g56270
Os.6210.1.S1_at--491--3451Chr03:32021158..32021182 (25 bp)
CAGTTTGTTTCCTTTGGTGCTGCAA
LOC_Os03g56270
Os.6210.1.S1_at--163--4371Chr03:32021197..32021221 (25 bp)
GCGAGTTTCGGTACTTTAGAGCCTT
LOC_Os03g56270
Os.6210.1.S1_at--814--10031Chr03:32021213..32021237 (25 bp)
TAGAGCCTTTTATCATCCATCTTCA
LOC_Os03g56270
Os.6210.1.S1_at--243--6931Chr03:32021240..32021264 (25 bp)
GTAGGCAATGGCTTTCTATCCAATT
LOC_Os03g56270
Os.6210.1.S1_at--720--3851Chr03:32021318..32021342 (25 bp)
CTGAGTTCCTGGTCCTGTGTAAACA
LOC_Os03g56270
Os.6210.1.S1_at--671--6871Chr03:32021447..32021471 (25 bp)
GTATTCTGCTCTTTTTATTCTTTTG
LOC_Os03g56270
Target Sequence 
TCCAGTTCCTTCTGGGTCTGCAGAAGCACTAACTGGTGATGCGAAAGATCAACAGCAGCAGCAAACAAATTCAGAGTCAA
CTACACCTCCTGATCTCATCAGCATATGAGTAACCAAGTCTAAAATTGCTGTCAACCTTTTGTTGCAAAGTTCGCAAGCT
TCAGTATCGGAAACTTATCTAGGTATGGATTTAGGTCTTGGTAAGTTTTTAGGTGTTCTGTGCTGTACATATTCCAGTTT
GGTGGGTTGTCCTGTTACCAGTTTGTTTCCTTTGGTGCTGCAATGTAGGATTCCNTAGCGAGTTTCGGTACTTTAGAGCC
TTTTATCATCCATCTTCAATGTAGGCAATGGCTTTCTATCCAATTTAGAATCAAAATCTAAGCTTTACTGTGGAACCAAG
TTTCCTTTAAAGCACTTCCTGAGTTCCTGGTCCTGTGTAAACAGTTCAAGTTGGGTCCTTTAAATTGAGAAACCCATACT
AGAATGCCATCATGGAAAAGCACCCTTGCATGGTGAACAGATATGCNCTAAATCAAGCAAAGTCAAAGTATTCTGCTCTT
TTTATTCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis