Browse Element(s) Details


Os.25316.2.S1_x_at

Description gb:AK059632.1
DB_XREF= gi:32969650
TID=Os.25316.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinesin-like protein (OSJNBb0094O03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A05, full insert sequence.
FL= gb:AK059632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5626010/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56234Os.14589.1.S1_at10/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56234Os.52138.1.S1_at4/113+31974263..31982288ribosomal protein S14p/S29e containing protein, expressed
LOC_Os03g56250Os.21066.1.S1_at10/113+31982905..31987314wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os03g56260Os.25316.1.S1_at11/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56260Os.25316.2.S1_x_at10/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007112biological_processmale meiosis cytokinesis
GO:0010245biological_processradial microtubular system formation
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25316.2.S1_x_at--122--1031Chr03:32009242..32009266 (25 bp)
AGGTCAATGCCATACTTTTCTACCC
LOC_Os03g56260
Os.25316.2.S1_x_at--283--7411Chr03:32009285..32009309 (25 bp)
TGTATAACTTTTCTCCTGGAACTGA
LOC_Os03g56260
Os.25316.2.S1_x_at--1085--5551Chr03:32009308..32009332 (25 bp)
GAAAGCGAGAGAACTCCCTGCAGTA
LOC_Os03g56260
Os.25316.2.S1_x_at--138--2931Chr03:32009663..32009687 (25 bp)
AAGGACATCATCAGCACTCTTCCAT
LOC_Os03g56260
Os.25316.2.S1_x_at--927--51Chr03:32009686..32009710 (25 bp)
ATTGCACATTATCAGGCCGGACGTT
LOC_Os03g56260
Os.25316.2.S1_x_at--750--3271Chr03:32009751..32009775 (25 bp)
CAACACCAATGTTACCCTGAGTTCA
LOC_Os03g56260
Os.25316.2.S1_x_at--41--6231Chr03:32009826..32009850 (25 bp)
GAGGCCACGGCCATTTTGATCTTGA
LOC_Os03g56260
Os.25316.2.S1_x_at--86--8851Chr03:32009848..32009872 (25 bp)
TGATGCCTCTATGATGAACCCCAAG
LOC_Os03g56260
Os.25316.2.S1_x_at--292--1191Chr03:32009894..32009918 (25 bp)
AGTAGCTGTTAGTCTCCAGTCTTTC
LOC_Os03g56260
Os.25316.2.S1_x_at--500--9111Chr03:32009997..32010021 (25 bp)
TGCTGTGATTGTAACCCCTTTGCAC
LOC_Os03g56260
Os.25316.2.S1_x_at--337--3411Chr03:32010034..32010058 (25 bp)
CAGAATTATTCCAAGATCGGTCTCA
NONE
Target Sequence 
AGGTCAATGCCATACTTTTCTACCCCGGGAAAACCAAAAGAAATGTATAACTTTTCTCCTGGAACTGAAAGCGAGAGAAC
TCCCTGCAGTAAGGAATACCCCACCTCATATTCTCGCAATGGAGATTCGCNTGTACAAATAAAGGATTCCTGGTATACAG
AAGAAAGGCAGTGAGGAAGNAAGGACATCATCAGCACTCTTCCATTGCACATTATCAGGCCGGACGTTTGCCACTGGAGC
CCGTTCCTACATNTTNTGCCAACAGGCCCAACACCAATGTTACCCTGAGTTCATGAAAATGCTTCAGTTTAGATGTTAGG
ATATCAGCCAAAGCTGCGGCCATGAGGCCACGGCCATTTTGATCTTGATGCCTCTATGATGAACCCCAAGATGGCTCACT
CCACCCTGTACAGTAGCTGTTAGTCTCCAGTCTTTCTTGAGNTTNTTNTCCTTTGTACAGTAGCTTTTCTGTAGGATGAA
TCCGATTTTTCAGANTGCTGTAAGCATGTAAATNTGCTGTGATTGTAACCCCTTTGCACCCATCAAATCAACAGAATTAT
TCCAAGATCGGTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25316.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis