Browse Element(s) Details


OsAffx.2349.1.S1_at

Description gb:NM_191508.1
DB_XREF= gi:34910099
GEN=B1100D10.25
TID=OsAffx.2349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1100D10.25 (B1100D10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g562701/11Receptor protein kinase CLAVATA1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56260Os.25316.1.S1_at11/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56260Os.25316.2.S1_x_at10/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2349.1.S1_at--838--5111Chr01:33501165..33501189 (25 bp)
GCACAGGACACCCATATCAAGTTTG
NONE
OsAffx.2349.1.S1_at--234--9731Chr01:33501181..33501205 (25 bp)
TCAAGTTTGATATTGCGACCTCTGC
NONE
OsAffx.2349.1.S1_at--868--3171Chr01:33501206..33501230 (25 bp)
AATTGTCTATGAGGGCTCCAGGCCA
NONE
OsAffx.2349.1.S1_at--706--5931Chr01:33501247..33501271 (25 bp)
GAGCAGGCATCATTATCGAAGTACA
NONE
OsAffx.2349.1.S1_at--583--1171Chr01:33501266..33501290 (25 bp)
AGTACATAAACACCTCTTGCTTCTC
NONE
OsAffx.2349.1.S1_at--1023--8271Chr01:33501299..33501323 (25 bp)
GGCATCTCAGCCCTACAGAAGGAAT
NONE
OsAffx.2349.1.S1_at--570--7112Chr03:32020458..32020477 (20 bp)
GTCAGCTGACATGTCTTTGTTCACT
LOC_Os03g56270
OsAffx.2349.1.S1_at--585--51Chr01:33501763..33501787 (25 bp)
ATTGTTGCCACTTCGATATCATCTG
NONE
OsAffx.2349.1.S1_at--824--831NONE
ATGGACCAATGACACGCCGAGAATC
NONE
OsAffx.2349.1.S1_at--1086--5951Chr01:33502557..33502581 (25 bp)
GAGAATCAGCGTCGAATCCACAGAA
NONE
OsAffx.2349.1.S1_at--848--6931Chr01:33502648..33502672 (25 bp)
GTAGAGGAGTATACGGCCCGTCCCG
NONE
Target Sequence 
GCACAGGACACCCATATCAAGTTTGATATTGCGACCTCTGCAATTGTCTATGAGGGCTCCAGGCCAACCATGAAGTTTCT
TAGAGCAGGCATCATTATCGAAGTACATAAACACCTCTTGCTTCTCCAAAAGAAGGCATCTCAGCCCTACAGAAGGAATG
TCTTAAAACACTTTGGGGAACCAGATGAATCCTTGAAGCTGTCAGCTGACATGTCTTTGTTCACTATTTCTGAATTGTTG
CCACTTCGATATCATCTGCAGATGGAATGGACCAATGACACGCCGAGAATCAGCGTCGAATCCACAGAACGCAACGAACC
AACGGTGGAAACCCACATGAAAAAAGAAAAATCCCGAGGTAGAGGAGGGATATCCGTAGAGGAGTATACGGCCCGTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis