Browse Element(s) Details


Os.53777.1.S1_at

Description gb:AK099964.1
DB_XREF= gi:32985173
TID=Os.53777.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126L24, full insert sequence.
FL= gb:AK099964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3453011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34470OsAffx.14133.1.S1_at11/114+20689847..20690305hypothetical protein
LOC_Os04g34480NANA4+20693397..20693994Plastocyanin-like domain containing protein
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34540Os.6272.1.S1_at10/114+20716788..20717943expressed protein
LOC_Os04g34550OsAffx.26326.1.S1_at10/114+20722436..20725489hypothetical protein
LOC_Os04g34560Os.15412.1.S1_x_at8/114+20725737..20727018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g34570OsAffx.26327.3.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_s_at8/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.16519.1.S1_at3/114+20727524..20733043expressed protein
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53777.1.S1_at--865--8391Chr04:20714667..20714691 (25 bp)
GGCGCACTTCAGTCCACGGTAATGG
LOC_Os04g34530
Os.53777.1.S1_at--521--6771Chr04:20714726..20714750 (25 bp)
GTTAGGACTTAACATCAGGCTCTAC
LOC_Os04g34530
Os.53777.1.S1_at--317--9951Chr04:20714484..20714889 (25 bp)
TACGCGGGACTCATAGCATCAGGCT
LOC_Os04g34530
Os.53777.1.S1_at--822--431Chr04:20714967..20714991 (25 bp)
ATCTTCGTCGCGCTGATGAGCTCGA
LOC_Os04g34530
Os.53777.1.S1_at--196--3751Chr04:20714997..20715021 (25 bp)
CTCAATGAGGCGTTGCACCTCGGAA
LOC_Os04g34530
Os.53777.1.S1_at--948--1751Chr04:20715013..20715143 (25 bp)
ACCTCGGAAGTGTGCTTGGTTCTGT
LOC_Os04g34530
Os.53777.1.S1_at--45--3891Chr04:20715140..20715164 (25 bp)
CTGTCCTGATTGTGGGTGGCTTGTA
LOC_Os04g34530
Os.53777.1.S1_at--414--551Chr04:20715235..20715259 (25 bp)
ATCCCTGTGACCACTGGCGGTGAGA
LOC_Os04g34530
Os.53777.1.S1_at--572--8611Chr04:20715283..20715307 (25 bp)
TGGGCCTACAGGTTGCTATTTGACA
LOC_Os04g34530
Os.53777.1.S1_at--157--9611Chr04:20715394..20715418 (25 bp)
TCATCTCGTGTATTGTGGACGCTAT
LOC_Os04g34530
Os.53777.1.S1_at--587--1951Chr04:20715440..20715464 (25 bp)
ACTGTTAATCTGTTATTGCCGTGGA
LOC_Os04g34530
Target Sequence 
GGCGCACTTCAGTCCACGGTAATGGCACTTTGTGTTCACAGGGACATGGAGCATTGGAGGTTAGGACTTAACATCAGGCT
CTACTCATCGGCTTACGCGGGACTCATAGCATCAGGCTCCGCGTTCCCTCTGCTGTCGTGGTGCCTGCGGAAGAAAGGCC
CCCTGTTCATCTCCGTGTTCAGCCCGCTGATGCTCATCTTCGTCGCGCTGATGAGCTCGATCATTCTCAATGAGGCGTTG
CACCTCGGAAGTGTGCTTGGTTCTGTCCTGATTGTGGGTGGCTTGTACATGGTGCTGTGGGGCAAAGCGAAAGAGGCGGC
TGATCTGTCTGAAGATGAAAATCAGGGCAAGGAATCCATCCCTGTGACCACTGGCGGTGAGAATGAAATGAAGTGAAGAG
AGCATTGGGCCTACAGGTTGCTATTTGACAGAAATGACAGAAAGATATGATTCTGAAATTCTGATAGAAATATAGAATGT
TCGGTTTGGATCAGGCATTGATGTTTCTACATCGATTCATCTCGTGTATTGTGGACGCTATCATTTGTCTGAATAGTCTG
ATACTGTTAATCTGTTATTGCCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis