Browse Element(s) Details


OsAffx.26327.1.S1_s_at

Description gb:NM_190248.1
DB_XREF= gi:34907579
GEN=B1078G07.31
TID=OsAffx.26327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.31 (B1078G07.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2040011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g1265011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g6693011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g287109/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g345708/11expressed protein
LOC_Os04g180301/11SNARE-interacting protein KEULE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20350Os.45173.1.S1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350OsAffx.20628.1.S1_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20350Os.47130.4.A1_x_at1/1112+11876779..11884028retrotransposon protein, putative, unclassified
LOC_Os12g20360OsAffx.19759.1.S1_at10/1112+11886841..11887374hypothetical protein
LOC_Os12g20370OsAffx.31821.1.S1_at11/1112+11889952..11892524Zinc knuckle family protein
LOC_Os12g20380OsAffx.31822.1.S1_at10/1112+11898125..11899921hypothetical protein
LOC_Os12g20390Os.26897.1.S1_at11/1112+11902032..11904607expressed protein
LOC_Os12g20390OsAffx.29424.1.S1_at4/1112+11902032..11904607expressed protein
LOC_Os12g20400OsAffx.26327.1.S1_s_at11/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400Os.15412.1.S1_x_at8/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400OsAffx.26327.1.S1_at7/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20410Os.10969.1.S1_at11/1112+11912727..11915931MAR-binding protein, putative, expressed
LOC_Os12g20420OsAffx.11270.1.S1_x_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.11270.1.S1_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.2.S1_at2/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.3.S1_x_at1/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20430NANA12+11926783..11928230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20440Os.15004.1.S1_at1/1112+11931860..11933987hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005829cellular_componentcytosol
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26327.1.S1_s_at--434--3435Chr05:7242814..7242838 (25 bp)
CAGAGTGGAGCTTCTTGGGATAATC
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--549--3974Chr05:7242841..7242865 (25 bp)
CGGTGCATGATTGTTGCCGATGATG
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--334--4513Chr05:7242856..7242880 (25 bp)
GCCGATGATGCTGTTTGGGCAAACA
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--543--8435Chr05:7243502..7243526 (25 bp)
GGCCAAACTGCTGAGGGCAACATGA
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--799--6135Chr05:7243514..7243538 (25 bp)
GAGGGCAACATGAATTTCACTTCTA
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--976--10515Chr05:7243529..7243553 (25 bp)
TTCACTTCTATTGAGCCATTCCAAC
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--869--55Chr05:7243538..7243562 (25 bp)
ATTGAGCCATTCCAACATGCTACTC
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--235--2514Chr05:7243551..7243575 (25 bp)
AACATGCTACTCTCACACAAGTGAA
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--573--5715Chr05:7243595..7243619 (25 bp)
GACTCTTTTCCTGATGTAAATTGGG
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--757--6675Chr05:7243619..7243643 (25 bp)
GTTGCTGATGATGATGAGACCACTG
LOC_Os05g12650
OsAffx.26327.1.S1_s_at--34--155Chr05:7243694..7243718 (25 bp)
ATTACTATCACCTCAAGAGCTAATG
LOC_Os05g12650
Target Sequence 
CAGAGTGGAGCTTCTTGGGATAATCAACGGTGCATGATTGTTGCCGATGATGCTGTTTGGGCAAACATAATTACATCAAA
TGAGAAAGTAAGGAAGTTCAGCAAAAACAAATCTTTTCCTCTCTTTGAATCCTTGGGTGAACTTTATGATGGCCAAACTG
CTGAGGGCAACATGAATTTCACTTCTATTGAGCCATTCCAACATGCTACTCTCACACAAGTGAATGAATATCTTGAGAGA
AGTGACTCTTTTCCTGATGTAAATTGGGTTGCTGATGATGATGAGACCACTGAAGTTCAAGATGAAGATAATGCAGTGGA
GCATGAAAATCAGGGAAGCCATATTACTATCACCTCAAGAGCTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26327.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis