Browse Element(s) Details


OsAffx.26327.1.S1_at

Description gb:NM_190248.1
DB_XREF= gi:34907579
GEN=B1078G07.31
TID=OsAffx.26327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.31 (B1078G07.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6693011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g2871011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g1265011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g3457011/11expressed protein
LOC_Os12g204007/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed
LOC_Os01g66900NANA1+39179845..39181126membrane protein, putative, expressed
LOC_Os01g66910OsAffx.2425.1.S1_s_at11/111+39186262..39187063hypothetical protein
LOC_Os01g66910OsAffx.2425.1.S1_at1/111+39186262..39187063hypothetical protein
LOC_Os01g66920Os.34226.1.S2_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66920Os.34226.1.S1_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66930OsAffx.26327.1.S1_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26327.1.S1_s_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930Os.15412.1.S1_x_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26326.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.16519.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26327.1.S1_at--1061--5935Chr05:7242987..7243011 (25 bp)
GAGAAAGTAAGGAAGTTCAGCAAAA
LOC_Os05g12650
OsAffx.26327.1.S1_at--959--8194Chr05:7242997..7243021 (25 bp)
GGAAGTTCAGCAAAAACAAATCTTT
LOC_Os05g12650
OsAffx.26327.1.S1_at--419--5114Chr05:7243006..7243030 (25 bp)
GCAAAAACAAATCTTTTCCTCTCTT
LOC_Os05g12650
OsAffx.26327.1.S1_at--326--2474Chr05:7243011..7243035 (25 bp)
AACAAATCTTTTCCTCTCTTTGAAT
LOC_Os05g12650
OsAffx.26327.1.S1_at--571--2194Chr05:7243012..7243036 (25 bp)
ACAAATCTTTTCCTCTCTTTGAATC
LOC_Os05g12650
OsAffx.26327.1.S1_at--1032--10655Chr05:7243021..7243045 (25 bp)
TTCCTCTCTTTGAATCCTTGGGTGA
LOC_Os05g12650
OsAffx.26327.1.S1_at--835--9255Chr05:7243022..7243046 (25 bp)
TCCTCTCTTTGAATCCTTGGGTGAA
LOC_Os05g12650
OsAffx.26327.1.S1_at--828--4295Chr05:7243023..7243047 (25 bp)
CCTCTCTTTGAATCCTTGGGTGAAC
LOC_Os05g12650
OsAffx.26327.1.S1_at--179--3775Chr05:7243024..7243048 (25 bp)
CTCTCTTTGAATCCTTGGGTGAACT
LOC_Os05g12650
OsAffx.26327.1.S1_at--1107--3755Chr05:7243026..7243050 (25 bp)
CTCTTTGAATCCTTGGGTGAACTTT
LOC_Os05g12650
OsAffx.26327.1.S1_at--80--9515Chr05:7243027..7243051 (25 bp)
TCTTTGAATCCTTGGGTGAACTTTA
LOC_Os05g12650
Target Sequence 
GAGAAAGTAAGGAAGTTCAGCAAAAACAAATCTTTTCCTCTCTTTGAATCCTTGGGTGAACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis