Browse Element(s) Details


Os.26388.3.S1_x_at

Description gb:NM_190241.1
DB_XREF= gi:34907565
GEN=B1078G07.24
TID=Os.26388.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.24 (B1078G07.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1078G07.24 (B1078G07.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6689011/11TAZ zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed
LOC_Os01g66900NANA1+39179845..39181126membrane protein, putative, expressed
LOC_Os01g66910OsAffx.2425.1.S1_s_at11/111+39186262..39187063hypothetical protein
LOC_Os01g66910OsAffx.2425.1.S1_at1/111+39186262..39187063hypothetical protein
LOC_Os01g66920Os.34226.1.S2_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66920Os.34226.1.S1_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66930OsAffx.26327.1.S1_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26327.1.S1_s_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930Os.15412.1.S1_x_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26326.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.16519.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26388.3.S1_x_at--170--2211Chr01:39172285..39172309 (25 bp)
ACAACTTGCTAGACTGTGCGACGCG
LOC_Os01g66890
Os.26388.3.S1_x_at--724--9311Chr01:39172319..39172343 (25 bp)
TCCCTCGTATGCACTCGTATGATCA
LOC_Os01g66890
Os.26388.3.S1_x_at--590--6051Chr01:39172347..39172371 (25 bp)
GAGATTTCAAGGCTATCACTCAAAC
LOC_Os01g66890
Os.26388.3.S1_x_at--1091--4911Chr01:39172423..39172447 (25 bp)
GCTTGAGTCCCTCGTCGAAGAAGAT
LOC_Os01g66890
Os.26388.3.S1_x_at--654--5231Chr01:39172658..39172682 (25 bp)
GAATAAGGTTTATCTGCAGCTACAT
LOC_Os01g66890
Os.26388.3.S1_x_at--447--831Chr01:39172717..39172741 (25 bp)
ATGGATGCAGGACAATTGGCCCTCG
LOC_Os01g66890
Os.26388.3.S1_x_at--467--10871Chr01:39172732..39172756 (25 bp)
TTGGCCCTCGAGATCAAACGCTAAA
LOC_Os01g66890
Os.26388.3.S1_x_at--1040--1511Chr01:39172758..39172782 (25 bp)
AGCAGTCAGGCCGTTTGCAGGTTTC
LOC_Os01g66890
Os.26388.3.S1_x_at--436--171Chr01:39172816..39172839 (24 bp)
ATTTCTCGGCGTGCAAAATGCGGGC
LOC_Os01g66890
Os.26388.3.S1_x_at--500--3271Chr01:39173183..39173207 (25 bp)
CAACAACCAGTTCCATCTCAGAAAG
LOC_Os01g66890
Os.26388.3.S1_x_at--807--4851Chr01:39173237..39173261 (25 bp)
GCTACGTTCTAGGTTCACAAGTTAC
LOC_Os01g66890
Target Sequence 
ACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCA
CTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAAGAA
GATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGGAAGCTCT
TATTCATATATGTCGAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTTGCAGGT
TTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAATGCGGGCATTTCAAGGAGAAAATGCA
ACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGTTCCA
TCTCAGAAAGGAGAAAATTTCCATCCCTGAAAACATAGTGCTACGTTCTAGGTTCACAAGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26388.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis