Browse Element(s) Details


Os.37969.2.S1_x_at

Description gb:NM_190238.1
DB_XREF= gi:34907559
GEN=B1078G07.20
TID=Os.37969.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37969 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ankyrin-kinase -like protein (B1078G07.20), mRNA.
PROD=ankyrin-kinase -like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6686011/11ankyrin-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37969.2.S1_x_at--1104--6531Chr01:39147354..39147378 (25 bp)
GATTTATCAAGCTGTATTCCGAGGA
LOC_Os01g66860
Os.37969.2.S1_x_at--633--4991Chr01:39147597..39147621 (25 bp)
GCATGACTTATCTTCACCAGTGCAA
LOC_Os01g66860
Os.37969.2.S1_x_at--221--6211Chr01:39147849..39147873 (25 bp)
GAGGCTGTCGAAAATCTCTCCTGGC
LOC_Os01g66860
Os.37969.2.S1_x_at--148--5551Chr01:39147879..39147903 (25 bp)
GAAACTGGCCGATCATGAGTCCATG
LOC_Os01g66860
Os.37969.2.S1_x_at--423--6111Chr01:39147895..39147918 (24 bp)
GAGTCCATGGTTGACAGCTTCAGTC
LOC_Os01g66860
Os.37969.2.S1_x_at--1030--9851Chr01:39148024..39148048 (25 bp)
TACACTGCACCTGAGCTGTACAGAA
LOC_Os01g66860
Os.37969.2.S1_x_at--703--9371Chr01:39148070..39148094 (25 bp)
TCGACGCCTTCTCATTTGGTTTCAT
LOC_Os01g66860
Os.37969.2.S1_x_at--1008--6191Chr01:39148255..39148279 (25 bp)
GAGGAATCTGGCCACACAATTCGAT
LOC_Os01g66860
Os.37969.2.S1_x_at--1108--791Chr01:39148283..39148307 (25 bp)
ATGGGATGCGTCCATCGCTGAAGAA
LOC_Os01g66860
Os.37969.2.S1_x_at--540--6511Chr01:39148319..39148341 (23 bp)
GATATCCTCCAGATTTCAAAGCGCT
LOC_Os01g66860
Os.37969.2.S1_x_at--126--2791Chr01:39148654..39148678 (25 bp)
AAGAGAGTCCATGTCGCAATGTGAA
LOC_Os01g66860
Target Sequence 
GATTTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGGGG
CATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTG
GAGGCCAACTGAAAATCGCAGGATTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCAT
GAGTCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGC
CTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGCC
ACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATC
GAAGAATGCTGGGATACTCAGGAACCAAAAAGAGAGTCCATGTCGCAATGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37969.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis