Browse Element(s) Details


Os.12623.1.S1_at

Description gb:AK104609.1
DB_XREF= gi:32989818
TID=Os.12623.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C02, full insert sequence.
FL= gb:AK104609.1 gb:AK064882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6685011/11Pectinacetylesterase, putative, expressed
LOC_Os01g668301/11Pectinacetylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein
LOC_Os01g66810Os.6266.1.S1_x_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66810Os.6266.1.S1_s_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12623.1.S1_at--415--6571Chr01:39139515..39139539 (25 bp)
GATTCATGTTTCACTCACTGTCAAA
LOC_Os01g66850
Os.12623.1.S1_at--516--5671Chr01:39139482..39139506 (25 bp)
GACATCTCATGGAACTCACAGGCCT
LOC_Os01g66850
Os.12623.1.S1_at--354--7051Chr01:39139293..39139469 (25 bp)
GTAACAAGATTGTCGCGGAGGCTAT
LOC_Os01g66850
Os.12623.1.S1_at--251--531Chr01:39139228..39139252 (25 bp)
ATCGACTGCGAGTATCCGTGTAACC
LOC_Os01g66850
Os.12623.1.S1_at--1012--7432Chr01:39139211..39139235 (25 bp)
GTGTAACCCCACATGTAGCAGCCAG
LOC_Os01g66850
Os.12623.1.S1_at--1072--5071Chr01:39139194..39139218 (25 bp)
GCAGCCAGCTGCCTAAATGATTTTA
LOC_Os01g66850
Os.12623.1.S1_at--221--731Chr01:39139178..39139202 (25 bp)
ATGATTTTACATTGGGCTGGACCCA
LOC_Os01g66850
Os.12623.1.S1_at--943--9971Chr01:39139150..39139174 (25 bp)
TACCACCCTTCCCTGAATATTTATG
LOC_Os01g66850
Os.12623.1.S1_at--477--6431Chr01:39139096..39139120 (25 bp)
GATCATCTTTCACCATTTGTTCTGT
LOC_Os01g66850
Os.12623.1.S1_at--953--1171Chr01:39138969..39138993 (25 bp)
AGTACATCGGCTGCATATTCTTCTG
LOC_Os01g66850
Os.12623.1.S1_at--761--6851Chr01:39138925..39138949 (25 bp)
GTTTGTTGCATTGTTACCTACCTTG
LOC_Os01g66850
Target Sequence 
GATTCATGTTTCACTCACTGTCAAACGCCATTCGACATCTCATGGAACTCACAGGCCTCCCCAGTTCTCGGTAACAAGAT
TGTCGCGGAGGCTATTGGGGATTGGTATTTCGAGAGAAGCTATGAAGTGAAAGAAATCGACTGCGAGTATCCGTGTAACC
CCACATGTAGCAGCCAGCTGCCTAAATGATTTTACATTGGGCTGGACCCAGACTACCACCCTTCCCTGAATATTTATGCA
GGCTTATTTGATGAAGCAGCAGCTGCAGATCATCTTTCACCATTTGTTCTGTGAACAACTAATAGCCATGCTTTGCTGAT
AATCAGACGCCTGTAATAAGTCAAACAGTGGCCATCTCGGGTGAAAAGGAATTACTACGAATACTTCATATTTCAGTACA
TCGGCTGCATATTCTTCTGCATATGATTGTTGCAGTGTGTTTGTTGCATTGTTACCTACCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis