Browse Element(s) Details


Os.37969.1.S1_at

Description gb:AK100268.1
DB_XREF= gi:32985477
TID=Os.37969.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ankyrin-kinase -like protein (B1078G07.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065A22, full insert sequence.
FL= gb:AK070097.1 gb:AK100268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6686011/11ankyrin-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66890Os.26388.3.S1_x_at11/111+39170578..39173385TAZ zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37969.1.S1_at--203--291Chr01:39148493..39148517 (25 bp)
ATACTCAGGGTATAGCAAGGCCAAC
LOC_Os01g66860
Os.37969.1.S1_at--159--1491Chr01:39148506..39148530 (25 bp)
AGCAAGGCCAACATTTTCAGAGATA
LOC_Os01g66860
Os.37969.1.S1_at--799--9591Chr01:39148532..39148556 (25 bp)
TCATCAGGCTCGACAAGATATACGC
LOC_Os01g66860
Os.37969.1.S1_at--499--8091Chr01:39148574..39148598 (25 bp)
GGACCTGGAAGGACTCGCTAAAGAT
LOC_Os01g66860
Os.37969.1.S1_at--813--2171Chr01:39148784..39148808 (25 bp)
ACACGTGTGGGCTAAGCTGCATGAA
LOC_Os01g66860
Os.37969.1.S1_at--1110--7431Chr01:39148818..39148842 (25 bp)
GTGTACATATCACTGCGAAGCAAAT
LOC_Os01g66860
Os.37969.1.S1_at--417--5391Chr01:39148834..39148858 (25 bp)
GAAGCAAATGCGTCACTCTCTGTGA
LOC_Os01g66860
Os.37969.1.S1_at--1108--5371Chr01:39148860..39148884 (25 bp)
GAAGAAGCCTGAGCTAGCACTCACT
LOC_Os01g66860
Os.37969.1.S1_at--1118--1491Chr01:39148875..39148899 (25 bp)
AGCACTCACTCGTCTGGAGGAGGAT
LOC_Os01g66860
Os.37969.1.S1_at--365--7991Chr01:39148896..39148920 (25 bp)
GGATGACACGACGTACCGACAAATT
LOC_Os01g66860
Os.37969.1.S1_at--23--8751Chr01:39148923..39148947 (25 bp)
TGTACGTGTTGTAAAAGGCCCGGCG
LOC_Os01g66860
Target Sequence 
ATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAA
GGGACCTGGAAGGACTCGCTAAAGATTTGGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATC
ACTGCGAAGCAAATGCGTCACTCTCTGTGAAGAAGAAGCCTGAGCTAGCACTCACTCGTCTGGAGGAGGATGACACGACG
TACCGACAAATTTGTGTACGTGTTGTAAAAGGCCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis