Browse Element(s) Details


OsAffx.21800.1.S1_at

Description gb:NM_190236.1
DB_XREF= gi:34907555
GEN=B1078G07.18
TID=OsAffx.21800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.18 (B1078G07.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g668501/11Pectinacetylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein
LOC_Os01g66810Os.6266.1.S1_x_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66810Os.6266.1.S1_s_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_x_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.1.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860Os.37969.2.S1_at11/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66860OsAffx.842.1.S1_x_at1/111+39145616..39149013ankyrin-kinase, putative, expressed
LOC_Os01g66870OsAffx.1081.1.S1_at11/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.47463.1.S1_x_at2/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.14491.2.S1_x_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g66870Os.10590.1.S1_at1/111+39153332..39166850transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21800.1.S1_at--1100--2671Chr01:39139672..39139696 (25 bp)
AAGCTTGTCAATCTGTTTCGGTTTA
LOC_Os01g66850
OsAffx.21800.1.S1_at--294--6731NONE
GTTCTCGGTAACAAGCTTGCTATAT
NONE
OsAffx.21800.1.S1_at--370--7431Chr01:39138817..39138841 (25 bp)
GTGTATCTCAATACCGGACGTCGTC
NONE
OsAffx.21800.1.S1_at--679--8111Chr01:39138802..39138826 (25 bp)
GGACGTCGTCGCTCAACCAAAAACA
NONE
OsAffx.21800.1.S1_at--226--2411Chr01:39138782..39138806 (25 bp)
AAACACGCGTCGACGGAGAAATGCT
NONE
OsAffx.21800.1.S1_at--1106--8851Chr01:39138750..39138774 (25 bp)
TGATGCCTTGATGGCACAGTGGCAC
NONE
OsAffx.21800.1.S1_at--859--1091Chr01:39138733..39138757 (25 bp)
AGTGGCACAGTAGCAGTGACGCTGC
NONE
OsAffx.21800.1.S1_at--193--5051Chr01:39138508..39138734 (25 bp)
GCAGAAAGATTGACCCTGGCTCGCC
NONE
OsAffx.21800.1.S1_at--551--491Chr01:39138551..39138575 (25 bp)
ATCTGGACCGCGCTATCTGGATCGT
NONE
OsAffx.21800.1.S1_at--869--10151Chr01:39138538..39138562 (25 bp)
TATCTGGATCGTACGGCTGTCAGCG
NONE
OsAffx.21800.1.S1_at--768--5951Chr01:39138510..39138534 (25 bp)
GAGAATGGCCAGTGTCTCACCCTCG
NONE
Target Sequence 
AAGCTTGTCAATCTGTTTCGGTTTATTTGGCCTCCCCAGTTCTCGGTAACAAGCTTGCTATATTCTGAAACGGAGGGTGT
ATCTCAATACCGGACGTCGTCGCTCAACCAAAAACACGCGTCGACGGAGAAATGCTGCGACGTTGATGCCTTGATGGCAC
AGTGGCACAGTAGCAGTGACGCTGCAGAAAGATTGACCCTGGCTCGCCTCGATCTGGACCGCGCTATCTGGATCGTACGG
CTGTCAGCGGCCGAGAATGGCCAGTGTCTCACCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis