Browse Element(s) Details


Os.46039.1.S1_at

Description gb:NM_190229.1
DB_XREF= gi:34907541
GEN=B1078G07.11
TID=Os.46039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.11 (B1078G07.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1078G07.11 (B1078G07.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6680010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein
LOC_Os01g66790NANA1+39106815..39112909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein
LOC_Os01g66810Os.6266.1.S1_x_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66810Os.6266.1.S1_s_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative
LOC_Os01g66830Os.12623.1.S1_at1/111+39127805..39130757Pectinacetylesterase, putative, expressed
LOC_Os01g66840OsAffx.1083.1.S1_at10/111+39134404..39137366Pectinacetylesterase family protein, expressed
LOC_Os01g66850Os.12623.1.S1_at11/111+39138898..39142062Pectinacetylesterase, putative, expressed
LOC_Os01g66850OsAffx.21800.1.S1_at1/111+39138898..39142062Pectinacetylesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46039.1.S1_at--840--8931Chr01:39115469..39115493 (25 bp)
TGACGACGGCACTGACGCCTGGGTC
NONE
Os.46039.1.S1_at--281--6151Chr01:39114442..39114466 (25 bp)
GAGGTGTTAGTTTTTGGAGCTGTTA
LOC_Os01g66800
Os.46039.1.S1_at--572--10831Chr01:39114429..39114453 (25 bp)
TTGGAGCTGTTATAAGCAAGCGTGG
LOC_Os01g66800
Os.46039.1.S1_at--233--3251Chr01:39114413..39114437 (25 bp)
CAAGCGTGGAGTTTTTGCCTGCGTG
LOC_Os01g66800
Os.46039.1.S1_at--131--4471Chr01:39114397..39114421 (25 bp)
GCCTGCGTGGCAGTTGTAACCCTAA
LOC_Os01g66800
Os.46039.1.S1_at--569--4651Chr01:39114393..39114417 (25 bp)
GCGTGGCAGTTGTAACCCTAAAACT
LOC_Os01g66800
Os.46039.1.S1_at--660--10391Chr01:39114369..39114393 (25 bp)
TTTTCCTAATCTTGACAAACTTCAG
LOC_Os01g66800
Os.46039.1.S1_at--940--8911Chr01:39114357..39114381 (25 bp)
TGACAAACTTCAGGCGGTTCTACCC
LOC_Os01g66800
Os.46039.1.S1_at--686--10451Chr01:39114314..39114338 (25 bp)
TTACCTAAGAGAAAAAGCTACGCAC
LOC_Os01g66800
Os.46039.1.S1_at--961--8551Chr01:39114279..39114303 (25 bp)
TGGATCTTGGTTGTTCTTAATTAAC
LOC_Os01g66800
Os.46039.1.S1_at--812--3131Chr01:39114261..39114285 (25 bp)
AATTAACAGTGACGGCTATTCATTT
LOC_Os01g66800
Target Sequence 
TGACGACGGCACTGACGCCTGGGTCCCGCCGCTGGCTTGCCCCAAGCGCGATCTGCCGCTGGCCGGTCTCGGGGAGGGGA
GCGATAACGACGATGATGATGAGGAGGGCCAGCAGTGGCTTGGCGACGAGGAGGGGAGTCCGCCGATGGCGAAGGCAGTG
GCGGCGGTGGAGGTTAGCCGGTCGGCGGCGGCGGCGCTCTCCTCGGGCAGCGGCGGACGGAGGAGGAAAGCCATCAGCCG
GAGGAGGAGGCTGGCAGGAGGTGTTAGTTTTTGGAGCTGTTATAAGCAAGCGTGGAGTTTTTGCCTGCGTGGCAGTTGTA
ACCCTAAAACTTTTCCTAATCTTGACAAACTTCAGGCGGTTCTACCCCGGCCCGGTGATTTCTTTTTACCTAAGAGAAAA
AGCTACGCACAAATTCTCATTGGATCTTGGTTGTTCTTAATTAACAGTGACGGCTATTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis