Browse Element(s) Details


Os.19617.1.S1_at

Description gb:AK105471.1
DB_XREF= gi:32990680
TID=Os.19617.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.8 (B1078G07.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-A01, full insert sequence.
FL= gb:AK105471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6676011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed
LOC_Os01g66780NANA1+39104890..39105914hypothetical protein
LOC_Os01g66790NANA1+39106815..39112909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66800Os.46039.1.S1_at10/111+39114212..39115266hypothetical protein
LOC_Os01g66810Os.6266.1.S1_x_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66810Os.6266.1.S1_s_at11/111+39117252..39118003hypothetical protein
LOC_Os01g66820OsAffx.21802.1.S1_at11/111+39122687..39123526receptor-like protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19617.1.S1_at--1148--4891Chr01:39098043..39098067 (25 bp)
GCTTCAATCTTTGCTGGCAACCGAA
LOC_Os01g66760
Os.19617.1.S1_at--859--2611Chr01:39098061..39098085 (25 bp)
AACCGAAGGCTTTGTGGTGCACCGT
LOC_Os01g66760
Os.19617.1.S1_at--922--7331Chr01:39098077..39098101 (25 bp)
GTGCACCGTTGGGTAACTGCAGGTT
LOC_Os01g66760
Os.19617.1.S1_at--774--3391Chr01:39098134..39098158 (25 bp)
CAGCTGTCGGTTTCGTGGTTGGATT
LOC_Os01g66760
Os.19617.1.S1_at--867--7911Chr01:39098150..39098174 (25 bp)
GGTTGGATTCGTGTTGGCCTTCTAC
LOC_Os01g66760
Os.19617.1.S1_at--20--6111Chr01:39098201..39098225 (25 bp)
GAGTCTCCATTCCTACATCTTTCGG
LOC_Os01g66760
Os.19617.1.S1_at--674--3551Chr01:39098216..39098240 (25 bp)
CATCTTTCGGATTTGATCTTCTGGA
LOC_Os01g66760
Os.19617.1.S1_at--481--431Chr01:39098231..39098255 (25 bp)
ATCTTCTGGAACTTTTGTGTGGCGT
LOC_Os01g66760
Os.19617.1.S1_at--949--3971Chr01:39098545..39098569 (25 bp)
CGGGATGTATCCACTTTCTAATGTA
LOC_Os01g66760
Os.19617.1.S1_at--321--8751Chr01:39098603..39098627 (25 bp)
TGTAAAATCTTGATACCTCCAGGTA
LOC_Os01g66760
Os.19617.1.S1_at--502--312Chr02:31389339..31389424 (25 bp)
ATACCTCCAGGTACTTTCTGAAGTA
NONE
Target Sequence 
GCTTCAATCTTTGCTGGCAACCGAAGGCTTTGTGGTGCACCGTTGGGTAACTGCAGGTTGCGCAGAGTCAACGACGAGAC
TAGTATCGGAGCAGCTGTCGGTTTCGTGGTTGGATTCGTGTTGGCCTTCTACTTCCCGCACTGGTTCGTCTTCTCCACGA
GTCTCCATTCCTACATCTTTCGGATTTGATCTTCTGGAACTTTTGTGTGGCGTTGTGGCAACCNGCCGTCAACTTCNGGT
GGGCAAATAAACATGTNCAAAAAGAGCAATTCTACGGTCCTTAAGGATGTATTATGAGGTACCAAAATTTTAGTGTAAAA
TTTGGTACCTCATGNTACCTCATAGTACCTAGGTATCAAGAGGTACCAAATTTANAATAGAAAAAATAGTATCTCATGNT
ACCTCCTCAAGNACNNTNAAATTGCTCGTGCAAAAATNCTTGTATTTCCATGAAGATTAGTGTCATTGTTATGGGTAATT
TTACCAATCTTAAAAAAAGTACCGGGATGTATCCACTTTCTAATGTAAAATTTGGTTCCTCGGGGTACCAAAATTTTTAA
TGTAAAATCTTGATACCTCCAGGTACTTTCTGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis