Browse Element(s) Details


OsAffx.11762.1.S1_at

Description tigr:9629.m06617
TID=OsAffx.11762.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Polygalacturonase (pectinase)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6671011/11Polygalacturonase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66750OsAffx.2423.1.S1_at8/111+39094042..39095129hypothetical protein
LOC_Os01g66760Os.19617.1.S1_at11/111+39096975..39098643Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11762.1.S1_at--326--2551Chr01:39076658..39076682 (25 bp)
AACTCCAACCTCTGGATCGAGCGCG
LOC_Os01g66710
OsAffx.11762.1.S1_at--659--9211Chr01:39076661..39076685 (25 bp)
TCCAACCTCTGGATCGAGCGCGTCG
LOC_Os01g66710
OsAffx.11762.1.S1_at--422--911Chr01:39077172..39077196 (25 bp)
AGGCGGTGCAGAACGTGACGGTGAA
LOC_Os01g66710
OsAffx.11762.1.S1_at--983--8971Chr01:39077193..39077217 (25 bp)
TGAAGACGACGTGGTTCACCGGCAC
LOC_Os01g66710
OsAffx.11762.1.S1_at--67--7511Chr01:39077203..39077227 (25 bp)
GTGGTTCACCGGCACGACCAACGGC
LOC_Os01g66710
OsAffx.11762.1.S1_at--315--2571Chr01:39077222..39077246 (25 bp)
AACGGCCTGCGGATCAAAACATGGG
LOC_Os01g66710
OsAffx.11762.1.S1_at--740--7091Chr01:39077267..39077291 (25 bp)
GTCAGGGGCGTCACGTTCTCGGACT
LOC_Os01g66710
OsAffx.11762.1.S1_at--1054--9031Chr01:39077459..39077483 (25 bp)
TGCAGCCGGAGCAACCCGTGCAGCG
LOC_Os01g66710
OsAffx.11762.1.S1_at--117--1491Chr01:39077468..39077492 (25 bp)
AGCAACCCGTGCAGCGGGATCAGGC
LOC_Os01g66710
OsAffx.11762.1.S1_at--625--411Chr01:39077486..39077510 (25 bp)
ATCAGGCTCCGGGACGTGAGGCTCA
LOC_Os01g66710
OsAffx.11762.1.S1_at--520--9271Chr01:39077493..39077517 (25 bp)
TCCGGGACGTGAGGCTCACGTACCA
LOC_Os01g66710
Target Sequence 
AACTCCAACCTCTGGATCGAGCGCGTCGCGTGCGGCCCCGGCCACGGCATCAGCATTGGGAGCCTGGGGAAGCAGCAGGG
GATGGCGGTGGAGGCGGTGCAGAACGTGACGGTGAAGACGACGTGGTTCACCGGCACGACCAACGGCCTGCGGATCAAAA
CATGGGGTAACTCCAAGCGGGGCTTCGTCAGGGGCGTCACGTTCTCGGACTCCACCATGGCCGGCGTCGGCAACCCCATC
ATCATCGACCAGCACTACTGCCCCGACGGCGGCTGCGGCGGCGCCGCGCGCGGGAGCAGCTCCGGGATCAAGATCAGCGA
GGTGGAGTACGCCGACGTGCGGGGCTCGTCGGCGACGCCCGTGGCCGTCAGCTTCGACTGCAGCCGGAGCAACCCGTGCA
GCGGGATCAGGCTCCGGGACGTGAGGCTCACGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis