Browse Element(s) Details


OsAffx.11761.1.S1_x_at

Description gb:NM_190221.1
DB_XREF= gi:34907525
GEN=B1099D03.35
TID=OsAffx.11761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1099D03.35 (B1099D03.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6669011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11761.1.S1_x_at--1145--4271Chr01:39066068..39066092 (25 bp)
CCTGCTAATCTTCTTACACTTGGTG
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--8--2111Chr01:39066120..39066144 (25 bp)
ACATGCTGGCTGCTGAATTTTCCCT
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--839--5211Chr01:39066134..39066158 (25 bp)
GAATTTTCCCTGAAGGCCTGCATCA
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--970--10711Chr01:39066168..39066192 (25 bp)
TTGCTTCACAATCGCCAAACTACAG
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--526--7691Chr01:39066192..39066216 (25 bp)
GGGTAATCAGCTGTGCACTCAGGAA
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--589--8711Chr01:39066224..39066248 (25 bp)
TGTCTCGCTGGCTTACAAGACCTAA
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--1111--2931Chr01:39066339..39066363 (25 bp)
AAGGCCAGTGGCTTGTAGCAACCGC
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--695--10011Chr01:39066354..39066378 (25 bp)
TAGCAACCGCCTGGAACATGTCATG
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--406--2111Chr01:39066369..39066393 (25 bp)
ACATGTCATGTTTGCCTTTACGGCT
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--462--491Chr01:39066438..39066462 (25 bp)
ATCTGGCTCGGCATCTTGAGGGCAT
LOC_Os01g66690
OsAffx.11761.1.S1_x_at--234--10011Chr01:39066474..39066498 (25 bp)
TAGCATCCATGCAGACGACCTTTGA
LOC_Os01g66690
Target Sequence 
CCTGCTAATCTTCTTACACTTGGTGTAACAGCTTCTAAAGGGGCCCTACCTAACATGCTGGCTGCTGAATTTTCCCTGAA
GGCCTGCATCACCACTGCCCTTGCTTCACAATCGCCAAACTACAGGGTAATCAGCTGTGCACTCAGGAAGCTAGCCTGTC
TCGCTGGCTTACAAGACCTAAATGGTAGCAAGAGTGATGCAGCCTATGATGTATTTCAACAAGCCTACCAGATTGTGGTT
GGACTGAAAGAGGGTGAATACCCAGTTGAGGAAGGCCAGTGGCTTGTAGCAACCGCCTGGAACATGTCATGTTTGCCTTT
ACGGCTTCACCAAGCTAAAGTGGCTAGAAAATGGATGAAAATGGGGTTAGATCTGGCTCGGCATCTTGAGGGCATGAAGG
AGCGTATAGCATCCATGCAGACGACCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11761.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis