Browse Element(s) Details


OsAffx.11759.1.S1_at

Description gb:NM_190220.1
DB_XREF= gi:34907523
GEN=B1099D03.33
TID=OsAffx.11759.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1099D03.33 (B1099D03.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66630OsAffx.23946.1.S1_at11/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66630OsAffx.21804.2.S1_x_at1/111+39025891..39028407S-domain receptor-like protein kinase, putative
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11759.1.S1_at--1085--5991Chr01:39050549..39050573 (25 bp)
GAGACCAGCAACGTGGAGCGCGTCA
LOC_Os01g66670
OsAffx.11759.1.S1_at--999--1651Chr01:39050533..39050557 (25 bp)
AGCGCGTCAGCCTGGAATGCGTCGT
LOC_Os01g66670
OsAffx.11759.1.S1_at--724--7091Chr01:39050528..39050552 (25 bp)
GTCAGCCTGGAATGCGTCGTCCACG
LOC_Os01g66670
OsAffx.11759.1.S1_at--808--7071Chr01:39050369..39050393 (25 bp)
GTCAACAACAAGAGCCCTAGCGAGA
LOC_Os01g66670
OsAffx.11759.1.S1_at--1097--1651Chr01:39050357..39050381 (25 bp)
AGCCCTAGCGAGATCCCGCGGGAGA
LOC_Os01g66670
OsAffx.11759.1.S1_at--139--6911Chr01:39050322..39050346 (25 bp)
GTATGCTAATGATAGGATCCCGCCC
LOC_Os01g66670
OsAffx.11759.1.S1_at--1141--9751Chr01:39050316..39050340 (25 bp)
TAATGATAGGATCCCGCCCTACATC
LOC_Os01g66670
OsAffx.11759.1.S1_at--333--1291Chr01:39050266..39050290 (25 bp)
AGATCCTCGGCATCTGGGTTTGGGA
LOC_Os01g66670
OsAffx.11759.1.S1_at--909--4931Chr01:39050257..39050281 (25 bp)
GCATCTGGGTTTGGGACGAGTCCCA
LOC_Os01g66670
OsAffx.11759.1.S1_at--413--10231Chr01:39050248..39050272 (25 bp)
TTTGGGACGAGTCCCAGTCCCAGTA
LOC_Os01g66670
OsAffx.11759.1.S1_at--121--6111Chr01:39050240..39050264 (25 bp)
GAGTCCCAGTCCCAGTACGTCGACG
LOC_Os01g66670
Target Sequence 
GAGACCAGCAACGTGGAGCGCGTCAGCCTGGAATGCGTCGTCCACGCCGCGCTGCTCGACTACCCCAAGGAGCAGCGGAA
CGAGGGCGACATCGGCCGCAACTGCGGCAGCTTCGGCCTCCTGATGGAGGTCGACCCGGCCTGCTACGCGGCGCCCGACA
TGTCCCCGGTCCGCATCGTCGTCAACAACAAGAGCCCTAGCGAGATCCCGCGGGAGATCCGGATCAGGTATGCTAATGAT
AGGATCCCGCCCTACATCGTCTCTCGCCACGTCGTGCCGGTCCAGATCCTCGGCATCTGGGTTTGGGACGAGTCCCAGTC
CCAGTACGTCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis