Browse Element(s) Details


OsAffx.11760.1.S1_at

Description tigr:9629.m06614
TID=OsAffx.11760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6668011/11S-domain receptor-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66640OsAffx.21804.2.S1_x_at11/111+39031550..39034322D-mannose binding lectin family protein, expressed
LOC_Os01g66650OsAffx.9609.1.S1_at11/111+39038860..39043605expressed protein
LOC_Os01g66650Os.51996.1.S1_at10/111+39038860..39043605expressed protein
LOC_Os01g66660OsAffx.2422.1.S1_at11/111+39045340..39046228hypothetical protein
LOC_Os01g66670OsAffx.11759.1.S1_at11/111+39050196..39051014hypothetical protein
LOC_Os01g66680OsAffx.11760.1.S1_at11/111+39056663..39061871S-domain receptor-like protein kinase, putative, expressed
LOC_Os01g66690OsAffx.11761.1.S1_x_at11/111+39063393..39066601tetratricopeptide repeat, putative, expressed
LOC_Os01g66700Os.23472.1.A1_at11/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66700Os.23472.2.A1_x_at10/111+39066908..39072781Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os01g66710OsAffx.11762.1.S1_x_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66710OsAffx.11762.1.S1_at11/111+39075884..39077617Polygalacturonase family protein
LOC_Os01g66720Os.8821.1.S1_at11/111+39079464..39081799NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os01g66730OsAffx.29329.2.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730OsAffx.29329.1.S1_x_at2/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.3.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66730Os.13615.2.S1_at1/111+39081935..39086331Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g66740OsAffx.23947.1.S1_at11/111+39086606..39089796Leucine Rich Repeat family protein
LOC_Os01g66740Os.8821.1.S1_at2/111+39086606..39089796Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11760.1.S1_at--97--651Chr01:39061323..39061347 (25 bp)
ATGCATGGAGGCTCATTCTTTCCAG
LOC_Os01g66680
OsAffx.11760.1.S1_at--1156--1091Chr01:39061407..39061431 (25 bp)
AGTGATGACATGAACCTAGGCGAGC
LOC_Os01g66680
OsAffx.11760.1.S1_at--245--3711Chr01:39061422..39061446 (25 bp)
CTAGGCGAGCTTGATAGGGCATGCA
LOC_Os01g66680
OsAffx.11760.1.S1_at--1131--1391Chr01:39061469..39061493 (25 bp)
AGACAGTGAGAGCTCCAGGCCGACA
LOC_Os01g66680
OsAffx.11760.1.S1_at--115--591Chr01:39061539..39061563 (25 bp)
ATGCCACCAGTTCCAAGATATCTTC
LOC_Os01g66680
OsAffx.11760.1.S1_at--217--10051Chr01:39061619..39061643 (25 bp)
TAGTAACTAGGCCTCTGCACCAAGA
LOC_Os01g66680
OsAffx.11760.1.S1_at--827--311Chr01:39061645..39061669 (25 bp)
ATACTCCATTTCTGTGTTACCTACG
LOC_Os01g66680
OsAffx.11760.1.S1_at--1157--6771Chr01:39061660..39061684 (25 bp)
GTTACCTACGATGTTTGATCTGATG
LOC_Os01g66680
OsAffx.11760.1.S1_at--698--6971Chr01:39061736..39061760 (25 bp)
GTACGGCAATAAAAACCTTCCAGTG
LOC_Os01g66680
OsAffx.11760.1.S1_at--900--2631Chr01:39061749..39061773 (25 bp)
AACCTTCCAGTGATCAGTCGGATGT
LOC_Os01g66680
OsAffx.11760.1.S1_at--606--7431Chr01:39061772..39061796 (25 bp)
GTGTTTGTTTGGTACCTTCAGCAGT
LOC_Os01g66680
Target Sequence 
ATGCATGGAGGCTCATTCTTTCCAGTGTTAGTTGCGAGGGAGCTTGTAGAAGGAGAGTTGCACAAGTTGTTTGGTTCTGA
ATCAAGTGATGACATGAACCTAGGCGAGCTTGATAGGGCATGCAAGGTTGCTTGTTGGTGCGTTCAAGACAGTGAGAGCT
CCAGGCCGACAATGGGGGAAATCGTTCAGATCCTAGAAGGACTGGTAGATGTTGAAATGCCACCAGTTCCAAGATATCTT
CAGGTTCTTGGTCAAGGTGTGAAATCATATGAAATTTCTTCTGAGATGAATCAAGCTAGTAACTAGGCCTCTGCACCAAG
AAATACTCCATTTCTGTGTTACCTACGATGTTTGATCTGATGTGCTAATTTAGCCATGTTAATTGTTTGATGTTGTATGT
GATAGTAATCTATGTACGGCAATAAAAACCTTCCAGTGATCAGTCGGATGTGTTTGTTTGGTACCTTCAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis